Chemical Components in the PDB

pdbe.org/chem
spacer

PDBeChem : Atoms of Molecule

 Molecule : NDF

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 28


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 CD1 C CD1 N Y N 0 0.791 -0.828 2.805
2 CE1 C CE1 N Y N 0 -0.158 -1.067 3.781
3 CZ C CZ N Y N 0 -1.231 -0.208 3.926
4 CE2 C CE2 N Y N 0 -1.355 0.889 3.096
5 CD2 C CD2 N Y N 0 -0.403 1.131 2.123
6 CG C CG N Y N 0 0.667 0.269 1.974
7 CB C CB N N N 0 1.702 0.53 0.911
8 CA C CA R N N 0 1.292 -0.173 -0.383
9 C C C N N N 0 2.327 0.087 -1.447
10 O O O N N N 0 3.265 -0.663 -1.573
11 OXT O OXT N N Y 0 2.206 1.153 -2.253
12 N N N N N N 0 -0.0050 0.339 -0.828
13 C2 C C2 N N N 0 -0.843 -0.457 -1.521
14 O2' O O2' N N N 0 -0.523 -1.599 -1.776
15 C1 C C1 N N N 0 -2.167 0.066 -1.975
16 O1 O O1 N N N 0 -3.004 -0.728 -2.667
17 O2 O O2 N N N 0 -2.488 1.207 -1.72
18 HD1 H HD1 N N N 0 1.629 -1.499 2.691
19 HE1 H HE1 N N N 0 -0.061 -1.925 4.429
20 HZ H HZ N N N 0 -1.974 -0.396 4.688
21 HE2 H HE2 N N N 0 -2.194 1.56 3.209
22 HD2 H HD2 N N N 0 -0.5 1.989 1.475
23 HB3 H 1HB N N N 0 2.668 0.149 1.242
24 HB2 H 2HB N N N 0 1.777 1.603 0.733
25 HA H HA N N N 0 1.216 -1.246 -0.205
26 HXT H HXT N N Y 0 2.871 1.32 -2.936
27 H H HN N N N 0 -0.262 1.252 -0.624
28 HO1 H HO1 N N N 0 -3.86 -0.389 -2.961