Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : NBV

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 36


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O9 O O9 N N N 0 -0.134 2.682 1.114
2 C12 C C12 N N N 0 -0.154 2.463 -0.298
3 C11 C C11 R N N 0 -0.547 1.013 -0.584
4 C10 C C10 R N N 0 -1.898 0.711 0.07
5 O1 O O1 N N N 0 -2.896 1.574 -0.479
6 C9 C C9 R N N 0 -2.277 -0.747 -0.202
7 O8 O O8 N N N 0 -3.51 -1.05 0.453
8 C8 C C8 S N N 0 -1.174 -1.662 0.336
9 O7 O O7 N N N 0 -1.493 -3.022 0.036
10 N1 N N1 N N N 0 0.475 0.112 -0.035
11 C7 C C7 N N N 0 0.156 -1.292 -0.326
12 C13 C C13 N N N 0 1.81 0.463 -0.537
13 C14 C C14 N N N 0 2.864 -0.377 0.186
14 C15 C C15 N N N 0 4.255 -0.012 -0.336
15 C16 C C16 N N N 0 5.309 -0.852 0.388
16 H9 H H9 N N N 0 0.108 3.582 1.37
17 H121 H 1H12 N N N 0 -0.88 3.134 -0.758
18 H122 H 2H12 N N N 0 0.835 2.66 -0.71
19 H11 H H11 N N N 0 -0.623 0.862 -1.661
20 H10 H H10 N N N 0 -1.827 0.875 1.145
21 H1 H H1 N N N 0 -3.779 1.439 -0.11
22 HA H HA N N N 0 -2.388 -0.9 -1.276
23 H8 H H8 N N N 0 -3.812 -1.959 0.324
24 HB H HB N N N 0 -1.091 -1.537 1.415
25 H7 H H7 N N N 0 -0.836 -3.659 0.348
26 H7C1 H 1H7C N N N 0 0.947 -1.932 0.066
27 H7C2 H 2H7C N N N 0 0.077 -1.431 -1.404
28 H131 H 1H13 N N N 0 1.86 0.265 -1.608
29 H132 H 2H13 N N N 0 2.0 1.521 -0.354
30 H141 H 1H14 N N N 0 2.815 -0.179 1.257
31 H142 H 2H14 N N N 0 2.674 -1.435 0.0040
32 H151 H 1H15 N N N 0 4.304 -0.21 -1.407
33 H152 H 2H15 N N N 0 4.445 1.046 -0.153
34 H161 H 1H16 N N N 0 5.119 -1.909 0.205
35 H162 H 2H16 N N N 0 6.3 -0.591 0.015
36 H163 H 3H16 N N N 0 5.259 -0.654 1.458