Chemical Components in the PDB

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  • NGZ (Stereoisomer)
  • LXB (Stereoisomer)
  • BM7 (Stereoisomer)
  • NGA (Stereoisomer)
  • NAA (Stereoisomer)
  • HSQ (Stereoisomer)
  • A2G (Stereoisomer)
  • LXZ (Stereoisomer)
  • NDG (Stereoisomer)
  • BM3 (Stereoisomer)
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PDBeChem : Atoms of Molecule

 Molecule : NAG

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 30


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 R N N 0 0.185 1.082 -0.421
2 C2 C C2 R N N 0 0.79 -0.22 0.112
3 C3 C C3 R N N 0 -0.124 -1.39 -0.265
4 C4 C C4 S N N 0 -1.526 -1.129 0.294
5 C5 C C5 R N N 0 -2.042 0.207 -0.246
6 C6 C C6 N N N 0 -3.417 0.504 0.355
7 C7 C C7 N N N 0 3.197 0.157 0.076
8 C8 C C8 N N N 0 4.559 -0.052 -0.533
9 N2 N N2 N N N 0 2.114 -0.422 -0.48
10 O1 O O1 N N Y 0 1.003 2.185 -0.024
11 O3 O O3 N N N 0 0.395 -2.6 0.291
12 O4 O O4 N N N 0 -2.405 -2.18 -0.114
13 O5 O O5 N N N 0 -1.13 1.248 0.113
14 O6 O O6 N N N 0 -3.949 1.691 -0.236
15 O7 O O7 N N N 0 3.074 0.845 1.067
16 H1 H H1 N N N 0 0.133 1.04 -1.509
17 H2 H H2 N N N 0 0.879 -0.163 1.197
18 H3 H H3 N N N 0 -0.174 -1.478 -1.35
19 H4 H H4 N N N 0 -1.483 -1.091 1.382
20 H5 H H5 N N N 0 -2.123 0.154 -1.332
21 H61 H H61 N N N 0 -4.088 -0.333 0.157
22 H62 H H62 N N N 0 -3.32 0.645 1.431
23 H81 H H81 N N N 0 4.56 0.32 -1.558
24 H82 H H82 N N N 0 5.305 0.49 0.05
25 H83 H H83 N N N 0 4.799 -1.115 -0.532
26 HN2 H HN2 N N N 0 2.212 -0.973 -1.273
27 HO1 H HO1 N N Y 0 0.679 3.044 -0.328
28 HO3 H HO3 N N Y 0 -0.135 -3.384 0.091
29 HO4 H HO4 N N Y 0 -3.312 -2.079 0.206
30 HO6 H HO6 N N Y 0 -4.822 1.94 0.099