Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : LIO

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 110


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 -3.323 2.288 -1.795
2 C2 C C2 R N N 0 -3.497 1.006 -2.612
3 C3 C C3 N N N 0 -2.152 0.6 -3.218
4 C4 C C4 N N N 0 -1.13 4.502 1.957
5 C5 C C5 N N N 0 -0.145 4.39 3.123
6 C6 C C6 N N N 0 1.477 5.46 1.716
7 C7 C C7 N N N 0 2.178 4.342 3.719
8 C8 C C8 N N N 0 1.394 3.066 1.845
9 C11 C C11 N N N 0 0.1 0.135 -2.461
10 C12 C C12 N N N 0 1.128 0.014 -1.365
11 C13 C C13 N N N 0 2.473 -0.392 -1.971
12 C14 C C14 N N N 0 3.516 -0.515 -0.858
13 C15 C C15 N N N 0 4.861 -0.921 -1.464
14 C16 C C16 N N N 0 5.905 -1.044 -0.352
15 C17 C C17 N N N 0 7.25 -1.45 -0.957
16 C18 C C18 N N N 0 8.293 -1.573 0.155
17 C19 C C19 N N N 0 9.639 -1.979 -0.45
18 C20 C C20 N N N 0 10.682 -2.102 0.662
19 C21 C C21 N N N 0 12.027 -2.508 0.057
20 C22 C C22 N N N 0 13.071 -2.631 1.169
21 C23 C C23 N N N 0 14.416 -3.037 0.564
22 C24 C C24 N N N 0 15.459 -3.16 1.676
23 C25 C C25 N N N 0 16.804 -3.567 1.07
24 C31 C C31 N N N 0 -5.299 -0.245 -1.59
25 C32 C C32 N N N 0 -5.8 -1.348 -0.693
26 C33 C C33 N N N 0 -7.33 -1.346 -0.688
27 C34 C C34 N N N 0 -7.839 -2.465 0.222
28 C35 C C35 N N N 0 -9.369 -2.463 0.227
29 C36 C C36 N N N 0 -9.877 -3.583 1.137
30 C37 C C37 N N N 0 -11.407 -3.581 1.142
31 C38 C C38 N N N 0 -11.916 -4.701 2.052
32 C39 C C39 N N N 0 -13.446 -4.698 2.058
33 C40 C C40 N N N 0 -13.954 -5.818 2.968
34 N N N N N N 1 1.226 4.315 2.601
35 O2 O O2 N N N 0 -3.98 -0.056 -1.749
36 O3 O O3 N N N 0 -1.162 0.484 -2.162
37 O11 O O11 N N N 0 0.411 -0.081 -3.608
38 O31 O O31 N N N 0 -6.085 0.47 -2.165
39 O1P O O1P N N N 0 -1.651 4.64 -0.989
40 O2P O O2P N N N 0 -3.487 3.847 0.551
41 O3P O O3P N N N 0 -2.294 2.096 -0.821
42 O4P O O4P N N N 0 -1.112 3.289 1.201
43 P P P R N N 0 -2.165 3.476 -0.003
44 H11 H 1H1 N N N 0 -3.046 3.107 -2.459
45 H12 H 2H1 N N N 0 -4.259 2.529 -1.292
46 H21 H 1H2 N N N 0 -4.218 1.18 -3.412
47 H31 H 1H3 N N N 0 -1.832 1.357 -3.934
48 H32 H 2H3 N N N 0 -2.257 -0.359 -3.725
49 H41 H 1H4 N N N 0 -0.84 5.334 1.315
50 H42 H 2H4 N N N 0 -2.134 4.674 2.344
51 H51 H 1H5 N N N 0 -0.242 5.266 3.765
52 H52 H 2H5 N N N 0 -0.365 3.491 3.699
53 H61 H 1H6 N N N 0 1.352 6.387 2.277
54 H62 H 2H6 N N N 0 2.494 5.404 1.329
55 H63 H 3H6 N N N 0 0.77 5.44 0.886
56 H71 H 1H7 N N N 0 1.992 3.492 4.375
57 H72 H 2H7 N N N 0 3.195 4.286 3.332
58 H73 H 3H7 N N N 0 2.053 5.268 4.28
59 H81 H 1H8 N N N 0 0.833 3.128 0.912
60 H82 H 2H8 N N N 0 2.45 2.914 1.625
61 H83 H 3H8 N N N 0 1.022 2.23 2.437
62 H121 H 1H12 N N N 0 0.808 -0.743 -0.649
63 H141 H 1H14 N N N 0 3.197 -1.272 -0.142
64 H122 H 2H12 N N N 0 1.232 0.973 -0.858
65 H131 H 1H13 N N N 0 2.792 0.365 -2.687
66 H132 H 2H13 N N N 0 2.368 -1.351 -2.478
67 H142 H 2H14 N N N 0 3.621 0.444 -0.351
68 H151 H 1H15 N N N 0 5.181 -0.164 -2.18
69 H152 H 2H15 N N N 0 4.757 -1.88 -1.971
70 H161 H 1H16 N N N 0 5.585 -1.801 0.364
71 H162 H 2H16 N N N 0 6.009 -0.085 0.156
72 H171 H 1H17 N N N 0 7.57 -0.693 -1.673
73 H172 H 2H17 N N N 0 7.145 -2.409 -1.465
74 H181 H 1H18 N N N 0 7.974 -2.33 0.871
75 H182 H 2H18 N N N 0 8.398 -0.614 0.663
76 H191 H 1H19 N N N 0 9.958 -1.222 -1.166
77 H192 H 2H19 N N N 0 9.534 -2.938 -0.958
78 H201 H 1H20 N N N 0 10.362 -2.859 1.378
79 H202 H 2H20 N N N 0 10.787 -1.143 1.17
80 H211 H 1H21 N N N 0 12.347 -1.751 -0.659
81 H212 H 2H21 N N N 0 11.923 -3.467 -0.451
82 H221 H 1H22 N N N 0 12.751 -3.389 1.885
83 H241 H 1H24 N N N 0 15.14 -3.918 2.392
84 H222 H 2H22 N N N 0 13.175 -1.673 1.677
85 H231 H 1H23 N N N 0 14.735 -2.28 -0.152
86 H232 H 2H23 N N N 0 14.311 -3.996 0.056
87 H242 H 2H24 N N N 0 15.564 -2.202 2.183
88 H251 H 1H25 N N N 0 17.548 -3.654 1.863
89 H252 H 2H25 N N N 0 16.7 -4.525 0.563
90 H253 H 3H25 N N N 0 17.124 -2.809 0.354
91 H321 H 1H32 N N N 0 -5.439 -2.308 -1.062
92 H322 H 2H32 N N N 0 -5.433 -1.187 0.32
93 H331 H 1H33 N N N 0 -7.691 -0.386 -0.319
94 H332 H 2H33 N N N 0 -7.697 -1.506 -1.702
95 H341 H 1H34 N N N 0 -7.478 -3.426 -0.147
96 H342 H 2H34 N N N 0 -7.472 -2.305 1.236
97 H351 H 1H35 N N N 0 -9.729 -1.503 0.596
98 H352 H 2H35 N N N 0 -9.736 -2.624 -0.787
99 H361 H 1H36 N N N 0 -9.517 -4.543 0.768
100 H362 H 2H36 N N N 0 -9.51 -3.422 2.151
101 H371 H 1H37 N N N 0 -11.768 -2.621 1.511
102 H372 H 2H37 N N N 0 -11.774 -3.742 0.129
103 H381 H 1H38 N N N 0 -11.555 -5.661 1.684
104 H382 H 2H38 N N N 0 -11.549 -4.54 3.066
105 H391 H 1H39 N N N 0 -13.807 -3.738 2.427
106 H392 H 2H39 N N N 0 -13.813 -4.859 1.044
107 H401 H 1H40 N N N 0 -13.594 -6.778 2.599
108 H402 H 2H40 N N N 0 -13.587 -5.657 3.981
109 H403 H 3H40 N N N 0 -15.044 -5.817 2.971
110 HOP1 H 1HOP N N N 0 -0.789 4.359 -1.327