Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : KME

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 40


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 2.362 0.516 -1.379
2 C2 C C2 R N N 0 1.349 0.593 -0.266
3 O2 O O2 N N N 0 1.826 -0.139 0.864
4 O6 O O6 N N N 0 0.111 0.032 -0.709
5 C3 C C3 N N N 0 1.133 2.057 0.127
6 C4 C C4 R N N 0 0.058 2.132 1.216
7 O4 O O4 N N N 0 -0.201 3.499 1.539
8 C5 C C5 R N N 0 -1.224 1.473 0.699
9 O5 O O5 N N N 0 -1.713 2.201 -0.429
10 C6 C C6 S N N 0 -0.918 0.032 0.284
11 C7 C C7 R N N 0 -2.18 -0.613 -0.29
12 O7 O O7 N N N 0 -3.209 -0.613 0.702
13 C8 C C8 N N N 0 -1.873 -2.054 -0.705
14 O8 O O8 N N N 0 -3.019 -2.619 -1.347
15 C9 C C9 N N N 0 -4.532 -0.535 0.168
16 C10 C C10 N N N 0 2.069 -1.461 0.684
17 C11 C C11 N N N 0 2.511 -2.192 1.687
18 C12 C C12 N N N 0 2.781 -3.661 1.487
19 O1A O O1A N N N 0 3.345 -0.176 -1.255
20 O1B O O1B N N N 0 2.169 1.211 -2.511
21 H31 H H3 N N N 0 2.066 2.473 0.506
22 H32 H H3A N N N 0 0.807 2.624 -0.745
23 H4 H H4 N N N 0 0.405 1.606 2.106
24 HO4 H HO4 N N Y 0 0.572 3.979 1.868
25 H5 H H5 N N N 0 -1.977 1.473 1.487
26 HO5 H HO5 N N Y 0 -1.924 3.126 -0.239
27 H6 H H6 N N N 0 -0.583 -0.534 1.153
28 H7 H H7 N N N 0 -2.514 -0.048 -1.16
29 H81 H H8 N N N 0 -1.03 -2.061 -1.395
30 H82 H H8A N N N 0 -1.625 -2.641 0.179
31 HO8 H HO8 N N Y 0 -2.895 -3.533 -1.637
32 H9 H H9 N N N 0 -5.254 -0.539 0.984
33 H9A H H9A N N N 0 -4.638 0.385 -0.406
34 H9B H H9B N N N 0 -4.712 -1.391 -0.481
35 H10 H H10 N N N 0 1.901 -1.915 -0.282
36 H11 H H11 N N N 0 2.68 -1.739 2.652
37 H12 H H12 N N N 0 3.138 -4.096 2.421
38 H12A H H12A N N N 0 1.862 -4.161 1.181
39 H12B H H12B N N N 0 3.539 -3.789 0.714
40 HO1B H HO1B N N N 0 2.846 1.129 -3.197