Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : KD0

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 35


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O4P O O4P N N N 0 -5.63 -0.667 1.337
2 P P P N N N 0 -5.259 -0.106 -0.125
3 O2P O O2P N N N 0 -5.34 -1.207 -1.111
4 O3P O O3P N N N 0 -6.294 1.057 -0.533
5 O1P O O1P N N N 0 -3.763 0.489 -0.108
6 C8 C C8 N N N 0 -2.606 -0.319 0.116
7 C7 C C7 R N N 0 -1.354 0.558 0.068
8 O7 O O7 N N N 0 -1.381 1.488 1.153
9 C6 C C6 R N N 0 -0.108 -0.323 0.184
10 O6 O O6 N N N 0 -0.081 -1.253 -0.902
11 C5 C C5 R N N 0 1.144 0.554 0.135
12 O5 O O5 N N N 0 1.12 1.355 -1.048
13 C4 C C4 R N N 0 2.389 -0.334 0.125
14 O4 O O4 N N N 0 2.414 -1.135 1.309
15 C3 C C3 N N N 0 3.642 0.543 0.077
16 C1 C C1 N N N 0 4.862 -0.33 -0.057
17 O3 O O3 N N N 0 4.743 -1.531 -0.109
18 C2 C C2 N N N 0 6.217 0.287 -0.126
19 O1 O O1 N N N 0 6.337 1.493 -0.074
20 O2 O O2 N N N 0 7.307 -0.493 -0.245
21 HO4P H HO4P N N N 0 -5.598 0.002 2.035
22 HO3P H HO3P N N N 0 -7.217 0.769 -0.564
23 H8 H H8 N N N 0 -2.679 -0.795 1.094
24 H8A H H8A N N N 0 -2.543 -1.085 -0.657
25 H7 H H7 N N N 0 -1.327 1.103 -0.876
26 HO7 H HO7 N N N 0 -1.405 1.072 2.026
27 H6 H H6 N N N 0 -0.135 -0.868 1.128
28 HO6 H HO6 N N N 0 -0.057 -0.837 -1.775
29 H5 H H5 N N N 0 1.167 1.202 1.012
30 HO5 H HO5 N N N 0 1.098 0.843 -1.868
31 H4 H H4 N N N 0 2.366 -0.982 -0.751
32 HO4 H HO4 N N N 0 2.435 -0.623 2.129
33 H3 H H3 N N N 0 3.581 1.217 -0.778
34 H3A H H3A N N N 0 3.712 1.127 0.995
35 HO2 H HO2 N N N 0 8.164 -0.046 -0.286