Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : JPT

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 26


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C7 C C1 N N N 0 -0.77 -0.239 -1.559
2 C8 C C2 N Y N 0 -1.96 0.005 -0.667
3 C11 C C3 N Y N 0 -2.397 1.231 -0.374
4 S2 S S1 N Y N 0 -3.795 1.121 0.687
5 C12 C C4 N Y N 0 -3.705 -0.635 0.672
6 C13 C C5 N Y N 0 -2.686 -1.025 -0.095
7 C6 C C6 N N N 0 2.888 2.185 0.649
8 O3 O O1 N N N 0 3.365 2.784 -0.557
9 C5 C C7 N N N 0 0.958 -1.48 -0.301
10 C4 C C8 N N N 0 0.483 -0.287 -0.723
11 O4 O O2 N N N 0 0.314 -2.634 -0.625
12 C1 C C9 N N N 0 2.145 -1.509 0.482
13 O2 O O3 N N N 0 2.61 -2.566 0.878
14 C2 C C10 N N N 0 2.774 -0.276 0.788
15 C3 C C11 N N N 0 2.228 0.869 0.33
16 O1 O O4 N N N 0 1.112 0.853 -0.409
17 H7 H H1 N N N 0 -0.896 -1.188 -2.08
18 H1 H H2 N N N 0 -0.69 0.567 -2.288
19 H11 H H3 N N N 0 -1.958 2.151 -0.733
20 H12 H H4 N N N 0 -4.376 -1.298 1.199
21 H13 H H5 N N N 0 -2.44 -2.065 -0.25
22 H62 H H6 N N N 0 3.724 2.017 1.327
23 H61 H H7 N N N 0 2.164 2.849 1.123
24 H3 H H8 N N N 0 3.802 3.636 -0.427
25 H4 H H11 N N N 0 0.735 -3.431 -0.274
26 H2 H H12 N N N 0 3.677 -0.254 1.38