Chemical Components in the PDB

pdbe.org/chem
spacer

PDBeChem : Atoms of Molecule

 Molecule : JK2

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 63


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C12 C C12 N Y N 0 3.663 1.69 0.199
2 C13 C C13 N Y N 0 3.244 -1.61 1.625
3 C14 C C14 N Y N 0 -6.187 1.171 -0.774
4 C16 C C16 N Y N 0 -0.458 0.247 0.8
5 C18 C C18 N N N 0 -2.916 0.352 0.417
6 C26 C C26 N Y N 0 5.874 0.756 0.169
7 C27 C C27 N Y N 0 -5.253 0.479 -0.014
8 C31 C C31 N Y N 0 7.938 -0.185 -0.683
9 C35 C C35 N Y N 0 4.053 -0.546 1.039
10 C36 C C36 N Y N 0 3.173 0.519 0.768
11 F38 F F38 N N N 0 9.978 1.013 -0.471
12 C28 C C28 N Y N 0 9.318 -0.107 -0.839
13 C07 C C07 N Y N 0 10.012 -1.178 -1.371
14 C04 C C04 N Y N 0 9.336 -2.324 -1.747
15 C10 C C10 N Y N 0 7.264 -1.339 -1.062
16 C05 C C05 N Y N 0 7.964 -2.404 -1.593
17 N21 N N21 N N N 0 7.231 0.893 -0.141
18 C11 C C11 N Y N 0 4.992 1.804 -0.095
19 C17 C C17 N Y N 0 5.412 -0.418 0.733
20 N37 N N37 N Y N 0 1.923 0.109 1.168
21 N19 N N19 N Y N 0 2.012 -1.189 1.682
22 C30 C C30 N Y N 0 0.75 0.868 1.077
23 C09 C C09 N Y N 0 0.797 2.245 1.262
24 C06 C C06 N Y N 0 -0.358 2.999 1.173
25 C29 C C29 N Y N 0 -1.624 1.007 0.71
26 C08 C C08 N Y N 0 -1.566 2.389 0.899
27 O22 O O22 N N N 0 -2.964 -0.851 0.253
28 N20 N N20 N N N 0 -4.041 1.09 0.33
29 C15 C C15 N Y N 0 -5.521 -0.817 0.406
30 C33 C C33 N Y N 0 -6.721 -1.421 0.066
31 O24 O O24 N N N 0 -6.983 -2.691 0.477
32 C02 C C02 N N N 0 -5.977 -3.341 1.257
33 C34 C C34 N Y N 0 -7.656 -0.73 -0.696
34 O25 O O25 N N N 0 -8.835 -1.324 -1.03
35 C03 C C03 N N N 0 -9.927 -1.152 -0.125
36 C32 C C32 N Y N 0 -7.387 0.567 -1.115
37 O23 O O23 N N N 0 -8.302 1.245 -1.859
38 C01 C C01 N N N 0 -7.959 2.575 -2.255
39 H12 H H12 N N N 0 2.991 2.508 -0.015
40 H13 H H13 N N N 0 3.602 -2.575 1.952
41 H14 H H14 N N N 0 -5.98 2.181 -1.096
42 H16 H H16 N N N 0 -0.496 -0.822 0.651
43 H07 H H07 N N N 0 11.084 -1.119 -1.493
44 H04 H H04 N N N 0 9.881 -3.159 -2.163
45 H10 H H10 N N N 0 6.192 -1.402 -0.943
46 H05 H H05 N N N 0 7.44 -3.301 -1.889
47 HN21 H HN21 N N N 0 7.683 1.736 0.021
48 H11 H H11 N N N 0 5.364 2.717 -0.537
49 H17 H H17 N N N 0 6.096 -1.229 0.937
50 H09 H H09 N N N 0 1.739 2.727 1.477
51 H06 H H06 N N N 0 -0.315 4.068 1.318
52 H08 H H08 N N N 0 -2.466 2.982 0.83
53 HN20 H HN20 N N N 0 -4.011 2.043 0.506
54 H15 H H15 N N N 0 -4.794 -1.354 0.998
55 H02 H H02 N N N 0 -5.797 -2.77 2.167
56 H02A H H02A N N N 0 -6.312 -4.345 1.518
57 H02B H H02B N N N 0 -5.055 -3.405 0.679
58 H03 H H03 N N N 0 -9.659 -1.561 0.849
59 H03A H H03A N N N 0 -10.152 -0.09 -0.024
60 H03B H H03B N N N 0 -10.803 -1.674 -0.51
61 H01 H H01 N N N 0 -8.773 3.0 -2.842
62 H01A H H01A N N N 0 -7.793 3.186 -1.368
63 H01B H H01B N N N 0 -7.051 2.552 -2.856