Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : IRF

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 44


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N Y N 0 -5.999 -5.582 -3.312
2 C2 C C2 N Y N 0 -6.921 -5.995 -4.25
3 O2 O O2 N N N 0 -7.75 -6.87 -3.988
4 N3 N N3 N Y N 0 -6.922 -5.414 -5.519
5 C4 C C4 N Y N 0 -6.067 -4.431 -5.958
6 O4 O O4 N N N 0 -6.043 -3.905 -7.058
7 C4A C C4A N Y N 0 -5.094 -4.025 -4.9
8 N5 N N5 N Y N 0 -4.244 -3.103 -5.216
9 C5A C C5A N Y N 0 -3.3 -2.674 -4.269
10 C6 C C6 N Y N 0 -2.399 -1.671 -4.659
11 C7 C C7 N Y N 0 -1.436 -1.196 -3.774
12 C7M C C7M N N N 0 -0.51 -0.129 -4.26
13 C8 C C8 N Y N 0 -1.366 -1.721 -2.491
14 C9 C C9 N Y N 0 -2.258 -2.719 -2.092
15 C9A C C9A N Y N 0 -3.241 -3.216 -2.969
16 N10 N N10 N Y N 0 -4.166 -4.224 -2.615
17 C10 C C10 N Y N 0 -5.108 -4.662 -3.538
18 C1' C C1* N N N 0 -4.098 -4.781 -1.264
19 C2' C C2* S N N 0 -3.152 -5.988 -1.242
20 O2' O O2* N N N 0 -3.637 -6.962 -2.167
21 C3' C C3* S N N 0 -3.039 -6.627 0.157
22 O3' O O3* N N N 0 -2.576 -5.654 1.093
23 C4' C C4* R N N 0 -2.086 -7.836 0.191
24 O4' O O4* N N N 0 -2.026 -8.345 1.525
25 C5' C C5* N N N 0 -0.67 -7.474 -0.253
26 I8 I I8 N N N 0 0.055 -1.057 -1.102
27 O5' O O5* N N N 0 0.134 -8.649 -0.225
28 H3 H H3 N N N 0 -7.619 -5.749 -6.177
29 H6 H H6 N N N 0 -2.457 -1.262 -5.666
30 H7M1 H 1H7M N N N 0 -1.05 0.58 -4.898
31 H7M2 H 2H7M N N N 0 -0.067 0.422 -3.421
32 H7M3 H 3H7M N N N 0 0.32 -0.557 -4.836
33 H9 H H9 N N N 0 -2.181 -3.112 -1.081
34 H1'1 H 1H1* N N N 0 -5.108 -5.074 -0.96
35 H1'2 H 2H1* N N N 0 -3.751 -3.994 -0.589
36 H2' H H2* N N N 0 -2.162 -5.666 -1.585
37 HA H HA N N N 0 -3.356 -6.667 -3.046
38 H4' H H4* N N N 0 -2.476 -8.643 -0.441
39 H3' H H3* N N N 0 -4.028 -6.97 0.488
40 HB H HB N N N 0 -1.812 -6.046 1.541
41 HC H HC N N N 0 -1.823 -9.289 1.448
42 H5' H H5* N N N 0 -0.474 -9.399 -0.143
43 H5'1 H 1H5* N N N 0 -0.658 -7.088 -1.278
44 H5'2 H 2H5* N N N 0 -0.222 -6.739 0.423