Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : IGP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 33


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 -0.229 -0.254 1.815
2 P P P N N N 0 0.324 0.083 4.17
3 OP1 O OP1 N N N 0 0.877 1.163 5.227
4 OP2 O OP2 N N N 0 -1.153 -0.385 4.604
5 OP3 O OP3 N N N 0 1.226 -1.089 4.144
6 OP4 O OP4 N N N 0 0.266 0.748 2.704
7 C2 C C2 R N N 0 -0.309 0.315 0.397
8 O2 O O2 N N N 0 0.992 0.724 -0.024
9 C3 C C3 S N N 0 -0.84 -0.758 -0.554
10 O3 O O3 N N N 0 -2.142 -1.168 -0.131
11 CG C CG N Y N 0 -0.918 -0.197 -1.95
12 CD2 C CD2 N Y N 0 0.139 -0.228 -2.963
13 CE2 C CE2 N Y N 0 -0.391 0.408 -4.099
14 CE3 C CE3 N Y N 0 1.437 -0.741 -2.994
15 CD1 C CD1 N Y N 0 -1.969 0.431 -2.5
16 NE1 N NE1 N Y N 0 -1.673 0.8 -3.784
17 CZ2 C CZ2 N Y N 0 0.393 0.529 -5.241
18 CZ3 C CZ3 N Y N 0 2.19 -0.611 -4.127
19 CH2 C CH2 N Y N 0 1.673 0.021 -5.249
20 H11 H 1H1 N N N 0 -1.222 -0.567 2.138
21 H12 H 2H1 N N N 0 0.442 -1.113 1.824
22 HOP1 H 1HOP N N N 0 0.895 0.726 6.09
23 HOP2 H 2HOP N N N 0 -1.708 0.406 4.608
24 H2 H H2 N N N 0 -0.981 1.173 0.388
25 HO2 H HO2 N N N 0 1.554 -0.062 -0.0020
26 H3 H H3 N N N 0 -0.168 -1.616 -0.544
27 HO3 H HO3 N N N 0 -2.704 -0.381 -0.154
28 HE3 H HE3 N N N 0 1.845 -1.235 -2.125
29 HD1 H HD1 N N N 0 -2.91 0.618 -2.003
30 HN1 H HN1 N N N 0 -2.275 1.268 -4.382
31 HZ2 H HZ2 N N N 0 0.0 1.019 -6.12
32 HZ3 H HZ3 N N N 0 3.196 -1.004 -4.149
33 HH2 H HH2 N N N 0 2.281 0.115 -6.137