Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : HWD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 23


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N Y N 0 0.024 -0.49 -0.517
2 C2 C C2 N Y N 0 -1.061 -0.101 -1.21
3 O2 O O2 N N N 0 -2.135 -0.023 -0.647
4 N3 N N3 N Y N 0 -0.971 0.211 -2.516
5 C4 C C4 N Y N 0 0.212 0.129 -3.155
6 O4 O O4 N N N 0 0.293 0.408 -4.338
7 C5 C C5 N Y N 0 1.361 -0.283 -2.439
8 C6 C C6 N Y N 0 1.244 -0.586 -1.128
9 C7 C C7 N N N 0 -0.103 -0.82 0.904
10 C8 C C8 S N N 0 0.132 0.437 1.742
11 N8 N N8 N N N 0 1.481 0.956 1.479
12 C9 C C9 N N N 0 0.001 0.098 3.205
13 O91 O O91 N N N 0 0.971 -0.256 3.832
14 O92 O O92 N N N 0 -1.192 0.19 3.811
15 H3 H H3 N N N 0 -1.763 0.494 -3.001
16 H5 H H5 N N N 0 2.319 -0.354 -2.933
17 H6 H H6 N N N 0 2.11 -0.903 -0.565
18 H71 H 1H7 N N N 0 0.635 -1.577 1.169
19 H72 H 2H7 N N N 0 -1.104 -1.204 1.1
20 H8 H H8 N N N 0 -0.605 1.194 1.477
21 H81 H 1H8 N N N 0 2.128 0.226 1.737
22 H82 H 2H8 N N N 0 1.558 1.07 0.479
23 H92O H OH92 N N N 0 -1.276 -0.026 4.749