Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : HT

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 56


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O1 O O1 N N N 0 10.783 0.939 0.26
2 C1 C C1 N Y N 0 9.457 0.651 0.199
3 C4 C C4 N Y N 0 6.753 0.064 0.073
4 C2 C C2 N Y N 0 8.523 1.678 0.238
5 C3 C C3 N Y N 0 7.177 1.39 0.176
6 C6 C C6 N Y N 0 9.04 -0.669 0.091
7 C5 C C5 N Y N 0 7.695 -0.965 0.028
8 C7 C C7 N Y N 0 5.31 -0.25 0.005
9 N1 N N1 N Y N 0 4.301 0.675 0.041
10 C8 C C8 N Y N 0 3.11 -0.022 -0.048
11 C9 C C9 N Y N 0 3.457 -1.383 -0.136
12 N2 N N2 N Y N 0 4.804 -1.454 -0.103
13 C10 C C10 N Y N 0 2.449 -2.351 -0.238
14 C11 C C11 N Y N 0 1.14 -1.974 -0.252
15 C12 C C12 N Y N 0 0.788 -0.621 -0.165
16 C13 C C13 N Y N 0 1.778 0.355 -0.062
17 C14 C C14 N Y N 0 -0.636 -0.227 -0.182
18 N3 N N3 N Y N 0 -1.693 -1.094 -0.278
19 C15 C C15 N Y N 0 -2.847 -0.335 -0.259
20 C16 C C16 N Y N 0 -2.434 1.005 -0.148
21 N4 N N4 N Y N 0 -1.079 1.004 -0.101
22 C17 C C17 N Y N 0 -3.395 2.021 -0.105
23 C18 C C18 N Y N 0 -4.722 1.709 -0.17
24 C19 C C19 N Y N 0 -5.134 0.382 -0.279
25 C20 C C20 N Y N 0 -4.199 -0.639 -0.324
26 N5 N N5 N N N 0 -6.498 0.08 -0.344
27 C21 C C21 N N N 0 -7.311 1.302 -0.28
28 C22 C C22 N N N 0 -8.789 0.936 -0.433
29 N6 N N6 N N N 0 -9.172 -0.003 0.63
30 C23 C C23 N N N 0 -8.358 -1.225 0.567
31 C24 C C24 N N N 0 -6.88 -0.859 0.72
32 C25 C C25 N N N 0 -10.604 -0.321 0.562
33 HO1 H HO1 N N N 0 11.139 0.963 1.159
34 H2 H H2 N N N 0 8.852 2.704 0.318
35 H3 H H3 N N N 0 6.451 2.189 0.207
36 H5 H H5 N N N 0 7.371 -1.992 -0.052
37 H6 H H6 N N N 0 9.769 -1.465 0.056
38 HN1 H HN1 N N N 0 4.402 1.637 0.114
39 H10 H H10 N N N 0 2.71 -3.396 -0.306
40 H11 H H11 N N N 0 0.368 -2.724 -0.331
41 H13 H H13 N N N 0 1.507 1.398 0.006
42 HN3 H HN3 N N N 0 -1.64 -2.06 -0.347
43 H17 H H17 N N N 0 -3.086 3.053 -0.019
44 H18 H H18 N N N 0 -5.459 2.497 -0.136
45 H20 H H20 N N N 0 -4.521 -1.666 -0.409
46 H211 H H211 N N N 0 -7.156 1.793 0.681
47 H212 H H212 N N N 0 -7.018 1.976 -1.085
48 H221 H H221 N N N 0 -9.397 1.838 -0.358
49 H222 H H222 N N N 0 -8.95 0.47 -1.406
50 H231 H H231 N N N 0 -8.651 -1.9 1.371
51 H232 H H232 N N N 0 -8.513 -1.716 -0.394
52 H241 H H241 N N N 0 -6.272 -1.761 0.644
53 H242 H H242 N N N 0 -6.72 -0.393 1.692
54 H253 H H253 N N N 0 -10.831 -0.774 -0.403
55 H252 H H252 N N N 0 -10.86 -1.018 1.36
56 H251 H H251 N N N 0 -11.185 0.595 0.679