Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : HMS

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 25


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O1 O O1 N N N 0 -3.506 -1.38 0.11
2 P1 P P1 N N N 0 -3.189 0.065 0.08
3 O2 O O2 N N N 0 -3.539 0.661 -1.374
4 O3 O O3 N N N 0 -4.061 0.829 1.197
5 O4 O O4 N N N 0 -1.623 0.277 0.384
6 C1 C C1 N N N 0 -0.59 -0.363 -0.368
7 C2 C C2 S N N 0 0.775 0.055 0.182
8 O5 O O5 N N N 0 0.966 1.455 -0.03
9 C3 C C3 S N N 0 1.876 -0.724 -0.541
10 O6 O O6 N N N 0 1.686 -2.125 -0.329
11 C4 C C4 N N N 0 3.221 -0.313 0.001
12 O7 O O7 N N N 0 3.823 -1.049 0.745
13 C5 C C5 N N N 0 3.815 1.017 -0.387
14 O8 O O8 N N N 0 5.084 1.176 0.25
15 H1 H H1 N N N 0 -3.356 1.606 -1.466
16 H2 H H2 N N N 0 -5.017 0.743 1.076
17 H3 H H3 N N N 0 -0.699 -1.444 -0.288
18 H4 H H4 N N N 0 -0.666 -0.067 -1.415
19 H5 H H5 N N N 0 0.818 -0.16 1.249
20 H6 H H6 N N N 0 0.939 1.72 -0.96
21 H7 H H7 N N N 0 1.833 -0.509 -1.608
22 H8 H H8 N N N 0 1.712 -2.389 0.601
23 H9 H H9 N N N 0 3.943 1.056 -1.469
24 H10 H H10 N N N 0 3.147 1.819 -0.071
25 H11 H H11 N N N 0 5.525 2.012 0.045