Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : HI5

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 44


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P P P N N N 0 0.743 -2.571 -0.202
2 O1P O O1P N N N 0 1.742 -2.122 -1.528
3 O2P O O2P N N N 0 1.16 -4.222 -0.448
4 O3P O O3P N N N 0 0.326 -0.921 0.043
5 O4P O O4P N N N 0 1.401 -2.641 1.385
6 O5P O O5P N N Y 0 -0.914 -2.95 -0.464
7 C1 C C1 N N N 0 -0.568 -0.882 1.157
8 C2 C C2 R N N 0 -0.98 0.566 1.43
9 C3 C C3 N N N 0 0.272 1.425 1.623
10 O3 O O3 N N N 0 1.142 1.278 0.47
11 C11 C C11 N N N 0 2.307 1.943 0.419
12 O11 O O11 N N N 0 2.631 2.664 1.332
13 C12 C C12 N N N 0 3.21 1.791 -0.778
14 C13 C C13 N N N 0 4.461 2.649 -0.585
15 C14 C C14 N N N 0 5.378 2.494 -1.8
16 O2 O O2 N N N 0 -1.745 1.073 0.304
17 C31 C C31 N N N 0 -3.08 0.933 0.284
18 C32 C C32 N N N 0 -3.874 1.459 -0.885
19 C33 C C33 N N N 0 -5.36 1.174 -0.66
20 C34 C C34 N N N 0 -6.167 1.707 -1.846
21 O31 O O31 N N N 0 -3.645 0.387 1.201
22 H1P H H1P N N N 0 2.129 -2.937 -1.876
23 H2P H H2P N N N 0 0.689 -4.732 0.226
24 H4P H H4P N N N 0 2.333 -2.395 1.313
25 H5P H H5P N N N 0 -1.077 -2.851 -1.412
26 H1C1 H 1H1C N N N 0 -0.071 -1.29 2.037
27 H1C2 H 2H1C N N N 0 -1.455 -1.475 0.932
28 H2 H H2 N N N 0 -1.591 0.606 2.332
29 H3C1 H 1H3C N N N 0 0.8 1.101 2.52
30 H3C2 H 2H3C N N N 0 -0.017 2.47 1.729
31 H121 H 1H12 N N N 0 2.682 2.115 -1.675
32 H122 H 2H12 N N N 0 3.499 0.745 -0.884
33 H131 H 1H13 N N N 0 4.989 2.325 0.312
34 H132 H 2H13 N N N 0 4.172 3.694 -0.479
35 H141 H 1H14 N N N 0 6.27 3.106 -1.662
36 H142 H 2H14 N N N 0 5.667 1.449 -1.906
37 H143 H 3H14 N N N 0 4.85 2.818 -2.697
38 H321 H 1H32 N N N 0 -3.72 2.534 -0.974
39 H322 H 2H32 N N N 0 -3.544 0.967 -1.799
40 H331 H 1H33 N N N 0 -5.515 0.098 -0.571
41 H332 H 2H33 N N N 0 -5.691 1.666 0.254
42 H341 H 1H34 N N N 0 -7.226 1.504 -1.687
43 H342 H 2H34 N N N 0 -6.012 2.782 -1.936
44 H343 H 3H34 N N N 0 -5.836 1.215 -2.761