Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : GTB

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 52


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 -4.418 4.276 1.643
2 CA1 C CA1 S N N 0 -3.669 4.453 0.392
3 C1 C C1 N N N 0 -4.457 5.331 -0.546
4 O11 O O11 N N N 0 -5.647 5.47 -0.387
5 O12 O O12 N N N 0 -3.838 5.958 -1.558
6 CB1 C CB1 N N N 0 -3.436 3.089 -0.261
7 CG1 C CG1 N N N 0 -2.532 2.242 0.636
8 CD1 C CD1 N N N 0 -2.303 0.898 -0.0070
9 OE1 O OE1 N N N 0 -2.812 0.643 -1.077
10 N2 N N2 N N N 0 -1.531 -0.02 0.608
11 CA2 C CA2 R N N 0 -1.308 -1.326 -0.017
12 C2 C C2 N N N 0 -2.442 -2.253 0.338
13 O2 O O2 N N N 0 -3.347 -1.861 1.044
14 CB2 C CB2 N N N 0 0.01 -1.916 0.489
15 SG2 S SG2 N N N 0 1.375 -0.8 0.062
16 N3 N N3 N N N 0 -2.45 -3.517 -0.129
17 CA3 C CA3 N N N 0 -3.553 -4.418 0.217
18 C3 C C3 N N N 0 -3.323 -5.762 -0.426
19 O31 O O31 N N N 0 -2.34 -5.948 -1.103
20 O32 O O32 N N N 0 -4.212 -6.752 -0.247
21 C' C C' N N N 0 2.827 -1.656 0.733
22 C1' C C1' N Y N 0 4.064 -0.841 0.454
23 C2' C C2' N Y N 0 4.488 0.106 1.367
24 C3' C C3' N Y N 0 5.622 0.854 1.111
25 C4' C C4' N Y N 0 6.333 0.653 -0.057
26 N41 N N41 N N N 1 7.548 1.453 -0.332
27 O41 O O41 N N N -1 7.921 2.289 0.472
28 O42 O O42 N N N 0 8.174 1.277 -1.361
29 C5' C C5' N Y N 0 5.91 -0.296 -0.97
30 C6' C C6' N Y N 0 4.777 -1.045 -0.712
31 HN11 H HN11 N N N 0 -4.529 5.155 2.125
32 HN12 H HN12 N N N 0 -5.313 3.843 1.47
33 HA1 H HA1 N N N 0 -2.709 4.922 0.607
34 HB11 H HB11 N N N 0 -4.392 2.582 -0.395
35 HB12 H HB12 N N N 0 -2.959 3.227 -1.231
36 HG11 H HG11 N N N 0 -1.576 2.748 0.77
37 HG12 H HG12 N N N 0 -3.009 2.104 1.607
38 HN2 H HN2 N N N 0 -1.123 0.184 1.464
39 HA2 H HA2 N N N 0 -1.261 -1.208 -1.1
40 HB21 H HB21 N N N 0 -0.037 -2.034 1.572
41 HB22 H HB22 N N N 0 0.176 -2.887 0.024
42 HN3 H HN3 N N N 0 -1.726 -3.831 -0.693
43 HA31 H HA31 N N N 0 -3.6 -4.537 1.299
44 HA32 H HA32 N N N 0 -4.492 -3.998 -0.144
45 H'1 H H'1 N N N 0 2.709 -1.781 1.81
46 H'2 H H'2 N N N 0 2.922 -2.634 0.262
47 H2' H H2' N N N 0 3.933 0.263 2.28
48 H3' H H3' N N N 0 5.953 1.594 1.824
49 H5' H H5' N N N 0 6.465 -0.452 -1.883
50 H6' H H6' N N N 0 4.448 -1.789 -1.423
51 HO1 H HO1 N N N 0 -4.385 6.51 -2.133
52 HO3 H HO3 N N N 0 -4.022 -7.596 -0.679