Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : GRG

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 65


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C20 C C20 N N N 0 10.224 -0.522 -1.775
2 C19 C C19 N N N 0 12.429 -0.542 -0.378
3 C18 C C18 N N N 0 10.939 -0.331 -0.463
4 C17 C C17 N N N 0 10.265 0.018 0.605
5 C16 C C16 N N N 0 8.776 0.229 0.521
6 C14 C C14 N N N 0 5.944 0.701 2.22
7 C13 C C13 N N N 0 6.587 -0.44 1.475
8 C15 C C15 N N N 0 8.076 -0.651 1.559
9 C12 C C12 N N N 0 5.851 -1.249 0.754
10 C11 C C11 N N N 0 4.382 -0.967 0.569
11 C9 C C9 N N N 0 4.055 -0.924 -0.925
12 C8 C C8 N N N 0 2.586 -0.642 -1.11
13 C10 C C10 N N N 0 1.592 -1.774 -1.073
14 C7 C C7 N N N 0 2.173 0.586 -1.303
15 C6 C C6 N N N 0 0.697 0.884 -1.364
16 C5 C C5 N N N 0 0.354 1.973 -0.346
17 C3 C C3 N N N 0 -1.122 2.271 -0.408
18 C4 C C4 N N N 0 -1.65 3.254 -1.42
19 C2 C C2 N N N 0 -1.945 1.676 0.419
20 C1 C C1 N N N 0 -3.421 1.974 0.358
21 O1 O O1 N N N 0 -4.158 0.752 0.429
22 PA P PA S N N 0 -5.766 0.693 0.39
23 O1A O O1A N N N 0 -6.361 1.415 1.7
24 O3A O O3A N N N 0 -6.247 -0.843 0.358
25 O2A O O2A N N N 0 -6.256 1.389 -0.822
26 PB P PB N N N 0 -7.61 -1.579 -0.08
27 O1B O O1B N N N 0 -7.337 -3.157 -0.247
28 O2B O O2B N N N 0 -8.733 -1.346 1.05
29 O3B O O3B N N N 0 -8.08 -1.021 -1.367
30 H201 H 1H20 N N N 0 10.943 -0.81 -2.542
31 H202 H 2H20 N N N 0 9.474 -1.306 -1.67
32 H203 H 3H20 N N N 0 9.738 0.41 -2.064
33 H191 H 1H19 N N N 0 12.941 0.398 -0.585
34 H192 H 2H19 N N N 0 12.691 -0.886 0.622
35 H193 H 3H19 N N N 0 12.732 -1.29 -1.11
36 H17 H H17 N N N 0 10.778 0.155 1.546
37 H161 H 1H16 N N N 0 8.545 1.276 0.717
38 H162 H 2H16 N N N 0 8.427 -0.039 -0.476
39 H141 H 1H14 N N N 0 6.693 1.205 2.831
40 H142 H 2H14 N N N 0 5.521 1.408 1.507
41 H143 H 3H14 N N N 0 5.152 0.315 2.862
42 H151 H 1H15 N N N 0 8.307 -1.698 1.363
43 H152 H 2H15 N N N 0 8.425 -0.382 2.557
44 H12 H H12 N N N 0 6.297 -2.117 0.292
45 H111 H 1H11 N N N 0 3.798 -1.755 1.046
46 H112 H 2H11 N N N 0 4.136 -0.008 1.023
47 HC91 H 1HC9 N N N 0 4.638 -0.136 -1.402
48 HC92 H 2HC9 N N N 0 4.301 -1.884 -1.379
49 H101 H 1H10 N N N 0 2.123 -2.723 -0.994
50 H102 H 2H10 N N N 0 0.935 -1.653 -0.211
51 H103 H 3H10 N N N 0 0.997 -1.766 -1.987
52 HC7 H HC7 N N N 0 2.891 1.385 -1.417
53 HC42 H 2HC4 N N N 0 -2.541 3.741 -1.023
54 HC61 H 1HC6 N N N 0 0.438 1.228 -2.365
55 HC62 H 2HC6 N N N 0 0.134 -0.02 -1.133
56 HC51 H 1HC5 N N N 0 0.614 1.629 0.655
57 HC52 H 2HC5 N N N 0 0.918 2.877 -0.577
58 HC41 H 1HC4 N N N 0 -1.904 2.727 -2.34
59 HC43 H 3HC4 N N N 0 -0.888 4.005 -1.63
60 HC2 H HC2 N N N 0 -1.567 0.972 1.145
61 HC11 H 1HC1 N N N 0 -3.698 2.615 1.195
62 HC12 H 2HC1 N N N 0 -3.65 2.483 -0.579
63 H1AO H OH1A N N N 0 -6.081 1.011 2.533
64 H2BO H OH2B N N N 0 -8.491 -1.687 1.921
65 H1BO H OH1B N N N 0 -8.116 -3.665 -0.51