Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : GN1

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 35


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1' R N N 0 2.368 0.767 1.447
2 OP1 O OP1 N N N 0 2.826 3.482 2.563
3 P P P N N N 0 1.602 2.599 3.143
4 OP2 O OP2 N N N 0 2.311 1.67 4.261
5 OP3 O OP3 N N N 0 0.419 3.383 3.629
6 C2 C C2' R N N 0 2.137 0.436 -0.031
7 C3 C C3' R N N 0 0.949 -0.515 -0.197
8 C4 C C4' S N N 0 1.107 -1.734 0.716
9 C5 C C5' R N N 0 1.425 -1.314 2.156
10 C6 C C6' N N N 0 1.759 -2.511 3.042
11 C8 C C8' N N N 0 2.6 3.542 -2.151
12 O1 O O1' N N N 0 1.289 1.548 1.958
13 O3 O O3' N N N 0 0.906 -0.961 -1.554
14 O4 O O4' N N N 0 -0.109 -2.477 0.674
15 O5 O O5' N N N 0 2.557 -0.438 2.193
16 N2 N N2' N N N 0 1.961 1.638 -0.813
17 C7 C C7' N N N 0 3.014 2.331 -1.384
18 O6 O O6' N N N 0 2.05 -2.04 4.344
19 O7 O O7' N N N 0 4.201 2.037 -1.311
20 H1 H H1' N N N 0 3.277 1.368 1.559
21 HOP1 H HOP1 N N N 0 3.154 4.242 3.09
22 HOP2 H HOP2 N N N 0 2.522 2.058 5.137
23 H2 H H2' N N N 0 3.032 -0.052 -0.435
24 H3 H H3' N N N 0 -0.0030 -0.0050 -0.0030
25 H4 H H4' N N N 0 1.9 -2.383 0.324
26 H5 H H5' N N N 0 0.56 -0.813 2.608
27 H61 H H6'1 N N N 0 2.628 -3.035 2.645
28 H62 H H6'2 N N N 0 0.907 -3.19 3.085
29 H81 H H8'1 N N N 0 3.057 4.465 -1.758
30 H82 H H8'2 N N N 0 2.905 3.494 -3.209
31 H83 H H8'3 N N N 0 1.517 3.741 -2.17
32 HO3 H HO3' N N Y 0 1.705 -1.49 -1.693
33 HO4 H HO4' N N Y 0 -0.383 -2.504 -0.255
34 HN2 H HN2' N N N 0 1.019 1.992 -0.952
35 HO6 H HO6' N N Y 0 2.976 -2.268 4.531