Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : GMZ

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 38


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O5 O O5 N N N 0 -0.864 0.26 0.266
2 C1 C C1 S N N 0 -2.206 0.001 -0.151
3 O1 O O1 N N N 0 -2.681 -1.189 0.484
4 C2 C C2 S N N 0 -3.098 1.181 0.243
5 O2 O O2 N N N 0 -3.107 1.319 1.666
6 C3 C C3 S N N 0 -2.548 2.461 -0.392
7 O3 O O3 N N N 0 -3.332 3.579 0.03
8 C4 C C4 S N N 0 -1.096 2.656 0.054
9 O4 O O4 N N N 0 -0.549 3.809 -0.59
10 C5 C C5 R N N 0 -0.281 1.419 -0.333
11 C6 C C6 R N N 0 1.158 1.581 0.163
12 O6 O O6 N N N 0 1.74 2.741 -0.435
13 C7 C C7 N N N 0 1.972 0.344 -0.224
14 O7 O O7 N N N 0 3.282 0.442 0.338
15 P2 P P2 N N N 0 4.41 -0.688 0.134
16 OP4 O OP4 N N N 0 4.816 -0.766 -1.423
17 OP5 O OP5 N N N 0 5.709 -0.315 1.009
18 OP6 O OP6 N N N 0 3.881 -1.999 0.571
19 P1 P P1 N N N 0 -2.509 -2.654 -0.16
20 OP1 O OP1 N N N 0 -3.362 -2.745 -1.523
21 OP2 O OP2 N N N 0 -1.08 -2.899 -0.456
22 OP3 O OP3 N N N 0 -3.039 -3.763 0.88
23 H1 H H1 N N N 0 -2.232 -0.129 -1.233
24 H2 H H2 N N N 0 -4.114 1.004 -0.112
25 HO2 H H3 N N Y 0 -3.44 0.541 2.134
26 H3 H H4 N N N 0 -2.588 2.376 -1.478
27 HO3 H H5 N N Y 0 -4.264 3.522 -0.219
28 H4 H H6 N N N 0 -1.062 2.791 1.135
29 HO4 H H7 N N Y 0 -1.02 4.63 -0.393
30 H5 H H8 N N N 0 -0.281 1.308 -1.417
31 H6 H H9 N N N 0 1.158 1.691 1.247
32 HO6 H H10 N N Y 0 1.773 2.711 -1.401
33 H71 H H11 N N N 0 1.479 -0.55 0.158
34 H72 H H12 N N N 0 2.046 0.283 -1.309
35 H13 H H13 N N N 0 5.172 0.06 -1.778
36 H14 H H14 N N N 0 6.431 -0.953 0.934
37 H15 H H15 N N N 0 -4.31 -2.595 -1.404
38 H16 H H16 N N N 0 -2.966 -4.671 0.558