Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : GL1

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 29


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 R N N 0 0.101 -0.506 0.672
2 C2 C C2 R N N 0 -1.034 -1.522 0.526
3 C3 C C3 S N N 0 -1.905 -1.13 -0.672
4 C4 C C4 R N N 0 -2.352 0.326 -0.496
5 C5 C C5 R N N 0 -1.118 1.203 -0.274
6 C6 C C6 N N N 0 -1.551 2.664 -0.132
7 H1 H H1 N N N 0 0.739 -0.792 1.508
8 H1P H H1P N N N 0 2.979 -2.082 0.278
9 H2 H H2 N N N 0 -1.639 -1.525 1.432
10 H2P H H2P N N N 0 4.173 0.298 -1.133
11 H3 H H3 N N N 0 -1.329 -1.228 -1.592
12 H4 H H4 N N N 0 -2.878 0.657 -1.392
13 H5 H H5 N N N 0 -0.446 1.105 -1.127
14 H61 H H61 N N N 0 -2.15 2.779 0.771
15 H62 H H62 N N N 0 -2.143 2.953 -1.001
16 HO2 H HO2 N N Y 0 0.06 -3.027 1.086
17 HO3 H HO3 N N Y 0 -2.721 -2.886 -0.83
18 HO4 H HO4 N N Y 0 -3.982 -0.147 0.452
19 HO6 H HO6 N N Y 0 -0.71 4.407 0.043
20 O1 O O1 N N N 0 0.874 -0.483 -0.53
21 O1P O O1P N N N 0 2.992 -1.274 0.81
22 O2 O O2 N N N 0 -0.484 -2.824 0.314
23 O2P O O2P N N N 0 3.281 0.071 -1.43
24 O3 O O3 N N N 0 -3.051 -1.982 -0.732
25 O3P O O3P N N N 0 2.373 1.167 0.654
26 O4 O O4 N N N 0 -3.223 0.425 0.633
27 O5 O O5 N N N 0 -0.441 0.792 0.912
28 O6 O O6 N N N 0 -0.393 3.497 -0.045
29 P P P N N N 0 2.38 -0.102 -0.107