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PDBeChem : Atoms of Molecule
Molecule : GL1
Atoms of a chemical element, that composes a molecule
Total Number of Atoms: 29
Record |
Atom Name |
Symbol |
PDB Name |
Stereochemistry |
Is Aromatic |
Is Leaving Atom |
Charge |
X-Coordinate |
Y-Coordinate |
Z-Coordinate |
1 |
C1 |
C |
C1 |
R |
N |
N |
0 |
0.101 |
-0.506 |
0.672 |
2 |
C2 |
C |
C2 |
R |
N |
N |
0 |
-1.034 |
-1.522 |
0.526 |
3 |
C3 |
C |
C3 |
S |
N |
N |
0 |
-1.905 |
-1.13 |
-0.672 |
4 |
C4 |
C |
C4 |
R |
N |
N |
0 |
-2.352 |
0.326 |
-0.496 |
5 |
C5 |
C |
C5 |
R |
N |
N |
0 |
-1.118 |
1.203 |
-0.274 |
6 |
C6 |
C |
C6 |
N |
N |
N |
0 |
-1.551 |
2.664 |
-0.132 |
7 |
O1 |
O |
O1 |
N |
N |
N |
0 |
0.874 |
-0.483 |
-0.53 |
8 |
O2 |
O |
O2 |
N |
N |
N |
0 |
-0.484 |
-2.824 |
0.314 |
9 |
O3 |
O |
O3 |
N |
N |
N |
0 |
-3.051 |
-1.982 |
-0.732 |
10 |
O4 |
O |
O4 |
N |
N |
N |
0 |
-3.223 |
0.425 |
0.633 |
11 |
O5 |
O |
O5 |
N |
N |
N |
0 |
-0.441 |
0.792 |
0.912 |
12 |
O6 |
O |
O6 |
N |
N |
N |
0 |
-0.393 |
3.497 |
-0.045 |
13 |
P |
P |
P |
N |
N |
N |
0 |
2.38 |
-0.102 |
-0.107 |
14 |
O1P |
O |
O1P |
N |
N |
N |
0 |
2.992 |
-1.274 |
0.81 |
15 |
O2P |
O |
O2P |
N |
N |
N |
0 |
3.281 |
0.071 |
-1.43 |
16 |
H4 |
H |
H4 |
N |
N |
N |
0 |
-2.878 |
0.657 |
-1.392 |
17 |
O3P |
O |
O3P |
N |
N |
N |
0 |
2.373 |
1.167 |
0.654 |
18 |
H1 |
H |
H1 |
N |
N |
N |
0 |
0.739 |
-0.792 |
1.508 |
19 |
H2 |
H |
H2 |
N |
N |
N |
0 |
-1.639 |
-1.525 |
1.432 |
20 |
H3 |
H |
H3 |
N |
N |
N |
0 |
-1.329 |
-1.228 |
-1.592 |
21 |
H5 |
H |
H5 |
N |
N |
N |
0 |
-0.446 |
1.105 |
-1.127 |
22 |
H61 |
H |
H61 |
N |
N |
N |
0 |
-2.15 |
2.779 |
0.771 |
23 |
H62 |
H |
H62 |
N |
N |
N |
0 |
-2.143 |
2.953 |
-1.001 |
24 |
HO2 |
H |
HO2 |
N |
N |
Y |
0 |
0.06 |
-3.027 |
1.086 |
25 |
HO3 |
H |
HO3 |
N |
N |
Y |
0 |
-2.721 |
-2.886 |
-0.83 |
26 |
HO4 |
H |
HO4 |
N |
N |
Y |
0 |
-3.982 |
-0.147 |
0.452 |
27 |
HO6 |
H |
HO6 |
N |
N |
Y |
0 |
-0.71 |
4.407 |
0.043 |
28 |
H1P |
H |
H1P |
N |
N |
N |
0 |
2.979 |
-2.082 |
0.278 |
29 |
H2P |
H |
H2P |
N |
N |
N |
0 |
4.173 |
0.298 |
-1.133 |
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