Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : GD9

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 62


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 -1.086 0.856 0.876
2 C10 C C10 N N N 0 5.272 -2.13 0.337
3 C11 C C11 N N N 0 4.308 -0.127 -0.86
4 C12 C C12 N N N 0 3.505 0.182 0.408
5 C13 C C13 N N N 0 7.225 -1.335 -2.568
6 C14 C C14 N N N 0 -3.292 3.634 -0.12
7 C15 C C15 N N N 0 -3.148 5.158 -0.102
8 C16 C C16 N N N 0 -0.783 4.957 -0.428
9 C17 C C17 N N N 0 -0.904 3.431 -0.45
10 C18 C C18 N Y N 0 -5.718 -0.116 -0.781
11 C19 C C19 N Y N 0 -6.907 -0.698 -1.192
12 C2 C C2 N Y N 0 -1.237 -0.532 0.916
13 C20 C C20 N Y N 0 -7.065 -2.066 -1.174
14 C21 C C21 N Y N 0 -6.025 -2.884 -0.739
15 C22 C C22 N Y N 0 -4.81 -2.308 -0.324
16 C23 C C23 N Y N 0 -3.956 -3.371 0.048
17 C3 C C3 N Y N 0 -3.396 -0.28 0.095
18 C4 C C4 N Y N 0 -2.161 1.643 0.424
19 C5 C C5 N Y N 0 0.953 -0.381 1.714
20 C6 C C6 N Y N 0 -0.043 -1.193 1.4
21 C7 C C7 N N N 0 2.29 -0.839 2.237
22 C8 C C8 N Y N 0 -4.665 -0.905 -0.343
23 C9 C C9 N N N 0 4.432 -1.742 1.558
24 H10 H H10 N N N 0 6.235 -2.522 0.665
25 H10A H H10A N N N 0 4.745 -2.885 -0.246
26 H11 H H11 N N N 0 3.688 -0.69 -1.558
27 H11A H H11A N N N 0 4.633 0.804 -1.324
28 H12 H H12 N N N 0 4.09 0.831 1.059
29 H12A H H12A N N N 0 2.574 0.68 0.137
30 H13 H H13 N N N 0 7.139 -2.412 -2.422
31 H13A H H13A N N N 0 6.459 -1.0 -3.267
32 H13B H H13B N N N 0 8.211 -1.1 -2.969
33 H14 H H14 N N N 0 -3.481 3.299 -1.14
34 H14A H H14A N N N 0 -4.123 3.339 0.52
35 H15 H H15 N N N 0 -3.012 5.498 0.925
36 H15A H H15A N N N 0 -4.044 5.614 -0.522
37 H16 H H16 N N N 0 0.03 5.267 -1.084
38 H16A H H16A N N N 0 -0.579 5.291 0.589
39 H17 H H17 N N N 0 0.0080 2.987 -0.051
40 H17A H H17A N N N 0 -1.055 3.092 -1.475
41 H18 H H18 N N N 0 -5.611 0.959 -0.801
42 H19 H H19 N N N 0 -7.719 -0.072 -1.531
43 H20 H H20 N N N 0 -7.997 -2.505 -1.497
44 H23 H H23 N N N 0 -2.947 -3.267 0.417
45 H6 H H6 N N N 0 0.029 -2.266 1.497
46 H7 H H7 N N N 0 2.707 -0.071 2.889
47 H7A H H7A N N N 0 2.163 -1.763 2.8
48 H9 H H9 N N N 0 4.173 -2.639 2.121
49 H9A H H9A N N N 0 5.003 -1.066 2.193
50 HN6 H HN6 N N N 0 -6.55 -4.91 -0.82
51 N1 N N1 N Y N 0 -2.413 -1.056 0.506
52 N2 N N2 N Y N 0 -3.283 1.045 0.051
53 N3 N N3 N N N 0 -2.05 3.023 0.375
54 N4 N N4 N N N 0 3.203 -1.073 1.11
55 N5 N N5 N N N 0 5.483 -0.929 -0.486
56 N6 N N6 N Y N 0 -5.879 -4.241 -0.608
57 N7 N N7 N Y N 0 -4.594 -4.495 -0.113
58 O1 O O1 N N N 0 6.918 0.915 -1.166
59 O2 O O2 N N N 0 7.863 -1.047 0.0070
60 O3 O O3 N N N 0 -2.01 5.534 -0.883
61 S1 S S1 N Y N 0 0.52 1.296 1.437
62 S2 S S2 N N N 0 7.002 -0.491 -0.977