Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : G7M

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 42


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 OP3 O O3P N N Y 0 6.031 -0.281 -0.172
2 P P P N N N 0 5.161 0.795 0.352
3 OP1 O O1P N N N 0 4.884 1.875 -0.811
4 OP2 O O2P N N N 0 5.889 1.518 1.593
5 O5' O O5* N N N 0 3.763 0.165 0.842
6 C5' C C5* N N N 0 3.225 -0.559 -0.266
7 C4' C C4* R N N 0 1.888 -1.187 0.135
8 O4' O O4* N N N 0 0.904 -0.159 0.383
9 C3' C C3* S N N 0 1.308 -2.015 -1.033
10 O3' O O3* N N N 0 1.603 -3.402 -0.858
11 C2' C C2* R N N 0 -0.217 -1.769 -0.947
12 O2' O O2* N N N 0 -0.91 -2.998 -0.72
13 C1' C C1* R N N 0 -0.374 -0.819 0.26
14 N9 N N9 N Y N 0 -1.432 0.162 0.0030
15 C8 C C8 N Y N 0 -1.264 1.412 -0.519
16 N7 N N7 N Y N 1 -2.415 2.01 -0.611
17 CN7 C CN7 N N N 0 -2.628 3.365 -1.125
18 C5 C C5 N Y N 0 -3.387 1.185 -0.15
19 C6 C C6 N N N 0 -4.791 1.294 -0.019
20 O6 O O6 N N N 0 -5.373 2.313 -0.352
21 N1 N N1 N N N 0 -5.472 0.243 0.49
22 C2 C C2 N N N 0 -4.812 -0.891 0.859
23 N2 N N2 N N N 0 -5.529 -1.942 1.373
24 N3 N N3 N N N 0 -3.508 -1.006 0.738
25 C4 C C4 N Y N 0 -2.768 -0.0070 0.242
26 HOP3 H 3HOP N N N 0
27 HOP2 H 2HOP N N N 0 6.72 1.881 1.257
28 H5' H 1H5* N N N 0 3.921 -1.344 -0.56
29 H5'' H 2H5* N N N 0 3.07 0.122 -1.104
30 H4' H H4* N N N 0 2.014 -1.813 1.018
31 H3' H H3* N N N 0 1.701 -1.659 -1.985
32 HO3' H H3T N N Y 0 1.218 -3.867 -1.613
33 H2' H H2* N N N 0 -0.578 -1.291 -1.858
34 HO2' H 2HO* N N N 0 -0.723 -3.568 -1.478
35 H1' H H1* N N N 0 -0.596 -1.387 1.164
36 H8 H H8 N N N 0 -0.317 1.84 -0.812
37 HN71 H 1HN7 N N N 0 -2.802 3.322 -2.2
38 HN72 H 2HN7 N N N 0 -3.494 3.809 -0.634
39 HN73 H 3HN7 N N N 0 -1.745 3.972 -0.924
40 H1 H H1 N N N 0 -6.435 0.296 0.593
41 H21 H 1H2 N N N 0 -5.073 -2.755 1.64
42 H22 H 2H2 N N N 0 -6.492 -1.871 1.468