Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : G16

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 33


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 R N N 0 1.811 0.014 -0.79
2 C2 C C2 R N N 0 2.526 1.368 -0.814
3 C3 C C3 S N N 0 1.945 2.258 0.29
4 C4 C C4 S N N 0 0.422 2.317 0.127
5 C5 C C5 R N N 0 -0.131 0.891 0.082
6 C6 C C6 N N N 0 -1.654 0.939 -0.049
7 O4 O O4 N N N 0 -0.151 3.019 1.232
8 O1 O O1 N N N 0 1.993 -0.591 0.491
9 O2 O O2 N N N 0 3.924 1.174 -0.595
10 O3 O O3 N N N 0 2.49 3.574 0.181
11 O5 O O5 N N N 0 0.418 0.195 -1.036
12 O6 O O6 N N N 0 -2.181 -0.387 0.026
13 P P P N N N 0 -3.78 -0.261 -0.118
14 O1P O O1P N N N 0 -4.107 0.471 -1.362
15 O2P O O2P N N N 0 -4.431 -1.733 -0.174
16 O3P O O3P N N N 0 -4.371 0.54 1.147
17 P' P P' N N N 0 1.985 -2.184 0.258
18 O1X O O1X N N N 0 2.316 -2.931 1.646
19 O2X O O2X N N N 0 0.592 -2.625 -0.243
20 O3X O O3X N N N -1 3.053 -2.556 -0.794
21 H1 H H1 N N N 0 2.234 -0.632 -1.56
22 H2 H H2 N N N 0 2.371 1.845 -1.782
23 H3 H H3 N N N 0 2.192 1.839 1.265
24 H4 H H4 N N N 0 0.174 2.834 -0.801
25 H5 H H5 N N N 0 0.138 0.369 1.0
26 H61 H H61 N N N 0 -2.069 1.541 0.759
27 H62 H H62 N N N 0 -1.923 1.383 -1.008
28 HO2 H HO2 N N Y 0 4.243 0.606 -1.31
29 HO3 H HO3 N N Y 0 3.448 3.49 0.285
30 HO4 H HO4 N N Y 0 0.229 3.908 1.226
31 HOP2 H HOP2 N N N 0 -5.387 -1.612 -0.26
32 HOP3 H HOP3 N N N 0 -4.137 0.031 1.935
33 HO1' H HO1' N N N 0 2.302 -3.88 1.463