Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : FYN

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 86


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C8 C C8 N Y N 0 10.177 1.752 6.199
2 N9 N N9 N Y N 0 10.737 0.512 6.036
3 C4 C C4 N Y N 0 11.861 0.475 6.812
4 C5 C C5 N Y N 0 11.926 1.72 7.418
5 N7 N N7 N Y N 0 10.871 2.506 7.027
6 N3 N N3 N Y N 0 12.72 -0.545 6.959
7 C2 C C2 N Y N 0 13.712 -0.207 7.812
8 N1 N N1 N Y N 0 13.905 0.96 8.472
9 C6 C C6 N Y N 0 12.997 1.947 8.276
10 N6 N N6 N N N 0 13.142 3.181 8.932
11 C1' C C1' R N N 0 10.22 -0.563 5.186
12 C2' C C2' R N N 0 9.179 -1.445 5.879
13 O2' O O2' N N N 0 9.419 -2.81 5.54
14 C3' C C3' S N N 0 7.872 -0.953 5.285
15 O3' O O3' N N N 0 6.852 -1.929 5.287
16 C4' C C4' R N N 0 8.285 -0.56 3.877
17 O4' O O4' N N N 0 9.598 0.007 4.015
18 C5' C C5' N N N 0 7.353 0.451 3.234
19 O5' O O5' N N N 0 7.83 0.757 1.935
20 P1 P P1 S N N 0 7.031 1.815 1.007
21 O11 O O11 N N N 0 5.51 1.264 0.973
22 O12 O O12 N N N 0 7.632 2.057 -0.346
23 O6 O O6 N N N 0 6.94 3.126 1.949
24 P2 P P2 R N N 0 8.093 4.108 2.513
25 O21 O O21 N N N 0 8.666 4.82 1.179
26 O22 O O22 N N N 0 9.129 3.445 3.373
27 O7 O O7 N N N 0 7.2 5.25 3.225
28 CPB C CPB N N N 0 6.203 5.908 2.449
29 CPA C CPA N N N 0 5.451 6.967 3.293
30 CP7 C CP7 R N N 0 4.745 6.312 4.517
31 CP9 C CP9 N N N 0 6.471 8.008 3.811
32 CP8 C CP8 N N N 0 4.437 7.715 2.405
33 OP3 O OP3 N N N 0 4.06 7.312 5.267
34 CP6 C CP6 N N N 0 3.704 5.256 4.152
35 OP2 O OP2 N N N 0 2.511 5.39 4.417
36 NP2 N NP2 N N N 0 4.251 4.174 3.481
37 CP5 C CP5 N N N 0 3.461 3.06 3.009
38 CP4 C CP4 N N N 0 3.382 1.99 4.089
39 CP3 C CP3 N N N 0 2.577 0.78 3.651
40 OP1 O OP1 N N N 0 2.051 0.687 2.545
41 NP1 N NP1 N N N 0 2.517 -0.182 4.649
42 CP2 C CP2 N N N 0 1.81 -1.431 4.492
43 CP1 C CP1 N N N 0 0.354 -1.351 4.931
44 S S S N N N 0 0.189 -0.935 6.694
45 P3 P P3 N N N 0 6.383 -2.538 6.706
46 CM1 C CM1 N N N 0 -1.558 -1.018 6.833
47 O31 O O31 N N N 0 7.459 -3.232 7.489
48 O32 O O32 N N N 0 5.103 -3.452 6.331
49 O33 O O33 N N N 0 5.723 -1.257 7.439
50 OM2 O OM2 N N N 0 -2.125 -0.799 7.896
51 H8 H H8 N N N 0 9.269 2.047 5.691
52 H1' H H1' N N N 0 11.103 -1.126 4.867
53 H2 H H2 N N N 0 14.458 -0.975 7.991
54 HA H HA N N N 0 8.68 -3.331 5.898
55 H6N1 H 1H6N N N N 0 13.326 4.007 8.394
56 H6N2 H 2H6N N N N 0 13.154 3.208 9.934
57 H2' H H2' N N N 0 9.196 -1.38 6.971
58 H3' H H3' N N N 0 7.526 -0.073 5.839
59 H4' H H4' N N N 0 8.356 -1.438 3.224
60 H5'1 H 1H5' N N N 0 7.32 1.372 3.823
61 H5'2 H 2H5' N N N 0 6.342 0.042 3.15
62 H11 H H11 N N N 0 4.862 1.699 0.378
63 H21 H H21 N N N 0 9.28 4.321 0.6
64 HPB1 H 1HPB N N N 0 6.706 6.373 1.595
65 HPB2 H 2HPB N N N 0 5.516 5.145 2.071
66 HP7 H HP7 N N N 0 5.494 5.866 5.184
67 HP91 H 1HP9 N N N 0 5.983 8.746 4.458
68 HP92 H 2HP9 N N N 0 6.943 8.557 2.988
69 HP93 H 3HP9 N N N 0 7.271 7.534 4.389
70 HP81 H 1HP8 N N N 0 4.939 8.297 1.624
71 HP82 H 2HP8 N N N 0 3.835 8.414 2.996
72 HP83 H 3HP8 N N N 0 3.755 7.022 1.899
73 HP3 H HP3 N N N 0 3.226 7.482 4.802
74 HP2 H HP2 N N N 0 5.246 4.162 3.28
75 HP51 H 1HP5 N N N 0 2.459 3.414 2.743
76 HP52 H 2HP5 N N N 0 3.915 2.654 2.098
77 HP41 H 1HP4 N N N 0 2.92 2.404 4.994
78 HP42 H 2HP4 N N N 0 4.391 1.654 4.36
79 HP1 H HP1 N N N 0 2.991 0.001 5.529
80 HP21 H 1HP2 N N N 0 1.854 -1.683 3.427
81 HP22 H 2HP2 N N N 0 2.36 -2.203 5.04
82 HP11 H 1HP1 N N N 0 -0.19 -0.602 4.346
83 HP12 H 2HP1 N N N 0 -0.13 -2.32 4.773
84 HM1 H HM1 N N N 0 -2.124 -1.278 5.925
85 H32 H H32 N N N 0 4.677 -3.984 7.036
86 H33 H H33 N N N 0 5.436 -1.34 8.373