Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : FDY

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 48


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C2 C C1 N N N 0 -5.193 -0.414 0.863
2 C4 C C2 N N N 0 -6.61 -2.269 0.768
3 C5 C C3 N N N 0 -6.45 -2.305 -0.638
4 C6 C C4 N N N 0 -5.661 -1.385 -1.233
5 O4 O O1 N N N 0 -7.316 -3.089 1.327
6 C7 C C5 N N N 0 -7.151 -3.356 -1.46
7 N3 N N1 N N N 0 -5.974 -1.319 1.482
8 O2 O O2 N N N 0 -4.621 0.433 1.521
9 N1 N N2 N N N 0 -5.032 -0.438 -0.472
10 C1' C C6 R N N 0 -4.177 0.561 -1.118
11 C2' C C7 N N N 0 -4.734 1.982 -0.879
12 C3' C C8 S N N 0 -3.473 2.854 -0.694
13 O3' O O3 N N N 0 -3.406 3.859 -1.707
14 O4' O O4 N N N 0 -2.868 0.571 -0.507
15 C4' C C9 R N N 0 -2.302 1.857 -0.842
16 C5' C C10 N N N 0 -1.174 2.212 0.129
17 O5' O O5 N N N 0 -0.057 1.352 -0.104
18 PA P P1 N N N 0 1.311 1.444 0.74
19 O1A O O6 N N N 0 1.021 1.059 2.276
20 O2A O O7 N N N 0 1.843 2.823 0.669
21 O3A O O8 N N N 0 2.391 0.42 0.125
22 PB P P2 N N N 0 3.983 0.242 0.287
23 O2B O O9 N N N 0 4.308 -0.017 1.707
24 O1B O O10 N N N 0 4.724 1.587 -0.197
25 C3B C C11 R N N 0 4.544 -1.161 -0.732
26 F2B F F1 N N N 0 3.9 -2.33 -0.312
27 PG P P3 N N N 0 6.347 -1.362 -0.549
28 O3G O O11 N N N 0 7.029 -0.126 -0.993
29 O2G O O12 N N N 0 6.701 -1.644 0.996
30 O1G O O13 N N N 0 6.843 -2.602 -1.448
31 H1 H H1 N N N 0 -5.527 -1.397 -2.305
32 H2 H H2 N N N 0 -7.736 -4.001 -0.804
33 H3 H H3 N N N 0 -7.813 -2.873 -2.179
34 H4 H H4 N N N 0 -6.411 -3.954 -1.992
35 H5 H H5 N N N 0 -6.078 -1.288 2.446
36 H6 H H6 N N N 0 -4.096 0.357 -2.185
37 H7 H H7 N N N 0 -5.307 2.317 -1.744
38 H8 H H8 N N N 0 -5.35 2.005 0.02
39 H9 H H9 N N N 0 -3.464 3.308 0.297
40 H10 H H10 N N N 0 -4.149 4.477 -1.698
41 H11 H H11 N N N 0 -1.934 1.854 -1.868
42 H12 H H12 N N N 0 -0.873 3.248 -0.026
43 H13 H H13 N N N 0 -1.523 2.084 1.153
44 H14 H H14 N N N 0 0.67 0.166 2.398
45 H15 H H15 N N N 0 4.556 1.819 -1.121
46 H16 H H16 N N N 0 4.305 -0.97 -1.778
47 H17 H H17 N N N 0 6.288 -2.441 1.355
48 H18 H H18 N N N 0 7.795 -2.767 -1.399