Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : FDG

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 38


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P P P N N N 0 4.954 -1.24 -0.031
2 N1 N N1 N N N 0 -5.318 -1.235 -0.469
3 C2 C C2 N N N 0 -4.601 -0.85 -1.56
4 N2 N N2 N N N 0 -5.158 -0.982 -2.807
5 N3 N N3 N N N 0 -3.386 -0.357 -1.45
6 C4 C C4 N N N 0 -2.805 -0.212 -0.254
7 C5 C C5 N N N 0 -3.494 -0.589 0.893
8 C6 C C6 N N N 0 -4.788 -1.114 0.768
9 O6 O O6 N N N 0 -5.421 -1.455 1.755
10 N7 N N7 N N N 0 -2.653 -0.327 1.978
11 C8 C C8 N N N 0 -1.504 0.186 1.496
12 O8 O O8 N N N 0 -0.549 0.527 2.169
13 N9 N N9 N N N 0 -1.576 0.264 0.154
14 C1' C C1' R N N 0 -0.522 0.77 -0.729
15 C2' C C2' S N N 0 -0.29 2.27 -0.462
16 F2' F F2' N N N 0 -1.103 2.712 0.588
17 C3' C C3' R N N 0 1.203 2.358 -0.065
18 O3' O O3' N N N 0 1.822 3.502 -0.658
19 C4' C C4' R N N 0 1.776 1.048 -0.662
20 O4' O O4' N N N 0 0.714 0.091 -0.454
21 C5' C C5' N N N 0 3.04 0.621 0.088
22 O5' O O5' N N N 0 3.611 -0.521 -0.553
23 OP1 O OP1 N N N 0 4.791 -1.616 1.391
24 OP3 O OP3 N N Y 0 5.231 -2.562 -0.908
25 HN1 H HN1 N N N 0 -6.213 -1.592 -0.579
26 HN2 H HN2 N N N 0 -6.053 -1.344 -2.902
27 HN2A H HN2A N N N 0 -4.658 -0.712 -3.593
28 HN7 H HN7 N N N 0 -2.859 -0.487 2.912
29 H1' H H1' N N N 0 -0.807 0.619 -1.771
30 H2' H H2' N N N 0 -0.483 2.853 -1.363
31 H3' H H3' N N N 0 1.317 2.375 1.019
32 HO3' H HO3' N N Y 0 1.436 4.345 -0.384
33 H4' H H4' N N N 0 1.982 1.168 -1.726
34 H5' H H5' N N N 0 3.76 1.439 0.081
35 H5'A H H5'A N N N 0 2.784 0.37 1.117
36 OP2 O OP2 N N N 0 6.197 -0.227 -0.179
37 HOP3 H HOP3 N N N 0 6.026 -3.046 -0.647
38 HOP2 H HOP2 N N N 0 6.363 0.062 -1.087