Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : DSM

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 42


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 -1.073 -2.142 1.299
2 C10 C C10 N Y N 0 -0.567 2.119 1.628
3 C11 C C11 N Y N 0 -0.522 1.284 0.52
4 C12 C C12 N Y N 0 -0.811 1.751 -0.739
5 C13 C C13 N Y N 0 -1.879 -1.151 -0.737
6 C14 C C14 N Y N 0 -1.054 -1.1 0.363
7 C15 C C15 N N N 0 1.184 -0.391 1.072
8 C16 C C16 N N N 0 2.123 -0.383 -0.135
9 C17 C C17 N N N 0 3.56 -0.618 0.335
10 C18 C C18 N N N 0 5.854 -0.833 -0.41
11 C2 C C2 N Y N 0 -1.924 -3.212 1.149
12 C3 C C3 N Y N 0 -2.773 -3.254 0.058
13 C4 C C4 N Y N 0 -2.749 -2.237 -0.868
14 C5 C C5 N N N 0 -1.94 -0.164 -1.876
15 C6 C C6 N N N 0 -0.796 0.819 -1.913
16 C7 C C7 N Y N 0 -1.125 3.089 -0.92
17 C8 C C8 N Y N 0 -1.159 3.936 0.173
18 C9 C C9 N Y N 0 -0.886 3.456 1.441
19 H1 H H1 N N N 0 -0.41 -2.104 2.151
20 H10 H H10 N N N 0 -0.352 1.732 2.614
21 H151 H H151 N N N 0 1.187 -1.382 1.528
22 H152 H H152 N N N 0 1.522 0.345 1.801
23 H161 H H161 N N N 0 2.059 0.582 -0.639
24 H162 H H162 N N N 0 1.834 -1.174 -0.827
25 H171 H H171 N N N 0 3.624 -1.582 0.839
26 H172 H H172 N N N 0 3.85 0.173 1.027
27 H181 H H181 N N N 0 6.501 -0.822 -1.287
28 H182 H H182 N N N 0 6.16 -0.043 0.277
29 H183 H H183 N N N 0 5.934 -1.799 0.089
30 H2 H H2 N N N 0 -1.929 -4.011 1.875
31 H3 H H3 N N N 0 -3.454 -4.083 -0.067
32 H4 H H4 N N N 0 -3.417 -2.279 -1.716
33 H51 H H51 N N N 0 -1.949 -0.719 -2.814
34 H52 H H52 N N N 0 -2.873 0.394 -1.8
35 H61 H H61 N N N 0 0.144 0.267 -1.914
36 H62 H H62 N N N 0 -0.862 1.404 -2.83
37 H7 H H7 N N N 0 -1.341 3.468 -1.908
38 H8 H H8 N N N 0 -1.401 4.979 0.035
39 H9 H H9 N N N 0 -0.924 4.122 2.29
40 HN2 H HN2 N N N 0 4.374 0.25 -1.345
41 N1 N N1 N N N 0 -0.175 -0.059 0.636
42 N2 N N2 N N N 0 4.463 -0.609 -0.824