Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : DG

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 37


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 OP3 O O3P N N Y 0 -1.603 -1.547 5.624
2 P P P N N N 0 -0.818 -0.321 4.935
3 OP1 O O1P N N N 0 -1.774 0.766 4.63
4 OP2 O O2P N N N 0 0.312 0.224 5.941
5 O5' O O5* N N N 0 -0.126 -0.826 3.572
6 C5' C C5* N N N 0 0.55 0.3 3.011
7 C4' C C4* R N N 0 1.233 -0.113 1.706
8 O4' O O4* N N N 0 0.253 -0.471 0.705
9 C3' C C3* S N N 0 1.976 1.091 1.073
10 O3' O O3* N N N 0 3.294 1.218 1.612
11 C2' C C2* N N N 0 2.026 0.692 -0.421
12 C1' C C1* R N N 0 0.897 -0.345 -0.573
13 N9 N N9 N Y N 0 -0.068 0.111 -1.575
14 C8 C C8 N Y N 0 -1.172 0.877 -1.341
15 N7 N N7 N Y N 0 -1.804 1.094 -2.458
16 C5 C C5 N Y N 0 -1.145 0.482 -3.472
17 C6 C C6 N N N 0 -1.361 0.377 -4.866
18 O6 O O6 N N N 0 -2.321 0.914 -5.391
19 N1 N N1 N N N 0 -0.473 -0.327 -5.601
20 C2 C C2 N N N 0 0.593 -0.928 -5.003
21 N2 N N2 N N N 0 1.474 -1.643 -5.774
22 N3 N N3 N N N 0 0.804 -0.839 -3.709
23 C4 C C4 N Y N 0 -0.027 -0.152 -2.917
24 HOP3 H 3HOP N N N 0 -2.002 -1.203 6.435
25 HOP2 H 2HOP N N N 0 0.913 -0.513 6.114
26 H5' H 1H5* N N N 0 1.299 0.661 3.715
27 H5'' H 2H5* N N N 0 -0.17 1.093 2.808
28 H4' H H4* N N N 0 1.921 -0.94 1.879
29 H3' H H3* N N N 0 1.411 2.013 1.211
30 HO3' H H3T N N Y 0 3.732 1.921 1.114
31 H2' H 1H2* N N N 0 2.99 0.246 -0.665
32 H2'' H 2H2* N N N 0 1.834 1.559 -1.053
33 H1' H H1* N N N 0 1.316 -1.306 -0.873
34 H8 H H8 N N N 0 -1.477 1.248 -0.373
35 H1 H H1 N N N 0 -0.601 -0.413 -6.559
36 H21 H 1H2 N N N 0 2.24 -2.073 -5.363
37 H22 H 2H2 N N N 0 1.329 -1.722 -6.73