Chemical Components in the PDB

pdbe.org/chem
spacer

PDBeChem : Atoms of Molecule

 Molecule : DCD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 19


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C5 C C5 N N N 0 -1.099 -0.781 2.504
2 C3 C C3 N N N 0 -1.087 0.432 1.573
3 N1 N N1 N N N 0 -0.7 0.01 0.225
4 C1 C C1 N N N 0 0.598 0.0050 -0.133
5 S2 S S2 N N N 0 1.807 0.368 1.024
6 S1 S S1 N N N 0 1.053 -0.373 -1.792
7 C2 C C2 N N N 0 -1.726 -0.405 -0.734
8 C4 C C4 N N N 0 -2.116 0.784 -1.612
9 H5C1 H 1H5C N N N 0 -1.387 -0.467 3.507
10 H5C2 H 2H5C N N N 0 -1.815 -1.515 2.134
11 H5C3 H 3H5C N N N 0 -0.105 -1.227 2.533
12 H3C1 H 1H3C N N N 0 -2.081 0.878 1.544
13 H3C2 H 2H3C N N N 0 -0.371 1.166 1.944
14 HS H HS N N N 0 -0.224 -0.476 -2.379
15 H2C1 H 1H2C N N N 0 -1.334 -1.206 -1.36
16 H2C2 H 2H2C N N N 0 -2.604 -0.762 -0.195
17 H4C1 H 1H4C N N N 0 -2.879 0.474 -2.326
18 H4C2 H 2H4C N N N 0 -2.508 1.585 -0.986
19 H4C3 H 3H4C N N N 0 -1.238 1.141 -2.151