Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : CTN

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 30


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O5' O O5* N N N 0 -3.369 2.603 -0.738
2 C5' C C5* N N N 0 -3.251 1.561 0.232
3 C4' C C4* R N N 0 -2.46 0.395 -0.365
4 O4' O O4* N N N 0 -1.093 0.789 -0.612
5 C1' C C1* R N N 0 -0.348 -0.446 -0.687
6 N1 N N1 N Y N 0 1.075 -0.199 -0.446
7 C6 C C6 N Y N 0 2.003 -0.659 -1.333
8 C5 C C5 N Y N 0 3.315 -0.419 -1.102
9 C4 C C4 N Y N 0 3.686 0.292 0.058
10 N3 N N3 N Y N 0 2.748 0.72 0.893
11 C2 C C2 N Y N 0 1.461 0.481 0.649
12 O2 O O2 N N N 0 0.617 0.886 1.432
13 N4 N N4 N N N 0 5.013 0.545 0.32
14 C2' C C2* R N N 0 -0.937 -1.334 0.432
15 O2' O O2* N N N 0 -1.002 -2.699 0.014
16 C3' C C3* S N N 0 -2.359 -0.765 0.65
17 O3' O O3* N N N 0 -3.345 -1.761 0.372
18 H5' H H5* N N N 0 -3.873 3.316 -0.323
19 H5'1 H 1H5* N N N 0 -4.245 1.216 0.519
20 H5'2 H 2H5* N N N 0 -2.73 1.94 1.112
21 H4' H H4* N N N 0 -2.929 0.052 -1.287
22 H1' H H1* N N N 0 -0.492 -0.917 -1.66
23 H6 H H6 N N N 0 1.694 -1.205 -2.212
24 H5 H H5 N N N 0 4.067 -0.774 -1.791
25 HN41 H 1HN4 N N N 0 5.265 1.038 1.116
26 HN42 H 2HN4 N N N 0 5.697 0.227 -0.291
27 H2' H H2* N N N 0 -0.344 -1.241 1.342
28 H1 H H1 N N N 0 -1.432 -3.189 0.728
29 H3' H H3* N N N 0 -2.47 -0.393 1.669
30 H2 H H2 N N N 0 -4.208 -1.334 0.465