Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : CSL

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 38


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1' C C1' R N N 0 -1.071 0.086 0.712
2 C2 C C2 N N N 0 -1.689 1.979 -0.687
3 C2' C C2' R N N 0 -1.363 -0.994 -0.347
4 C3' C C3' R N N 0 0.014 -1.268 -1.0
5 C4 C C4 N N N 0 -3.345 3.483 -0.109
6 C4' C C4' R N N 0 0.995 -0.749 0.083
7 C5 C C5 N N N 0 -3.572 2.77 1.086
8 C5' C C5' N N N 0 2.334 -0.359 -0.547
9 C6 C C6 N N N 0 -2.832 1.665 1.341
10 CA' C CA' N N N 0 -2.321 -3.774 -1.057
11 H1' H H1' N N N 0 -1.293 -0.297 1.707
12 H2' H H2' N N N 0 -2.071 -0.622 -1.087
13 H3' H H3' N N N 0 0.124 -0.705 -1.926
14 H3T H H3T N N Y 0 1.082 -2.897 -1.553
15 H4' H H4' N N N 0 1.141 -1.497 0.862
16 H5 H H5 N N N 0 -4.327 3.098 1.785
17 H5'1 H H5'1 N N N 0 2.174 0.434 -1.277
18 H5'2 H H5'2 N N N 0 2.769 -1.227 -1.042
19 H6 H H6 N N N 0 -2.991 1.099 2.247
20 HA'1 H HA'1 N N N 0 -1.37 -3.921 -1.567
21 HA'2 H HA'2 N N N 0 -2.713 -4.739 -0.733
22 HA'3 H HA'3 N N N 0 -3.031 -3.305 -1.739
23 HN41 H HN41 N N N 0 -3.927 5.094 -1.22
24 HN42 H HN42 N N N 0 -4.767 4.909 0.223
25 HOP2 H HOP2 N N N 0 6.385 1.226 1.449
26 HOP3 H HOP3 N N N 0 4.211 2.668 -0.329
27 N1 N N1 N N N 0 -1.882 1.277 0.445
28 N3 N N3 N N N 0 -2.412 3.064 -0.955
29 N4 N N4 N N N 0 -4.086 4.606 -0.397
30 O1P O O1P N N N 0 5.457 -0.467 -0.552
31 O2 O O2 N N N 0 -0.837 1.614 -1.481
32 O2P O O2P N N N 0 5.473 0.922 1.556
33 O3' O O3' N N N 0 0.201 -2.666 -1.229
34 O3P O O3P N N Y 0 4.678 1.927 -0.739
35 O4' O O4' N N N 0 0.325 0.414 0.614
36 O5' O O5' N N N 0 3.222 0.104 0.472
37 P P P N N N 0 4.724 0.598 0.168
38 SE2' SE SE2' N N N 0 -2.054 -2.619 0.504