Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : CKP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 28


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O3P O O3P N N N 0 -4.21 1.263 -1.14
2 P P P N N N 0 -3.549 0.308 -0.026
3 O1P O O1P N N N 0 -3.641 0.959 1.3
4 O2P O O2P N N N 0 -4.334 -1.097 0.01
5 O6 O O1 N N N 0 -2.002 0.049 -0.39
6 C6 C C1 N N N 0 -1.113 -0.676 0.462
7 C5 C C2 R N N 0 0.274 -0.736 -0.182
8 O2 O O2 N N Y 0 2.658 0.394 -1.744
9 C4 C C3 S N N 0 1.258 -1.529 0.715
10 O4 O O3 N N N 0 1.18 -2.93 0.444
11 C3 C C4 R N N 0 2.629 -0.957 0.278
12 O3 O O4 N N N 0 3.249 -1.819 -0.677
13 C2 C C5 R N N 0 2.283 0.4 -0.365
14 O5 O O5 N N N 0 0.863 0.581 -0.245
15 C1 C C6 N N N 0 3.007 1.508 0.357
16 O6B O O6B N N N 0 3.709 2.273 -0.26
17 O1 O O6A N N N 0 2.87 1.645 1.685
18 H1 H H1 N N N 0 -5.144 1.462 -0.984
19 H2 H H2 N N N 0 -4.315 -1.58 -0.827
20 H61 H H3 N N N 0 -1.044 -0.174 1.427
21 H62 H H4 N N N 0 -1.491 -1.688 0.605
22 H5 H H5 N N N 0 0.216 -1.178 -1.176
23 HO2 H H6 N N Y 0 2.467 1.221 -2.207
24 H4 H H7 N N N 0 1.071 -1.328 1.77
25 HO4 H H8 N N Y 0 1.778 -3.468 0.98
26 H3 H H9 N N N 0 3.277 -0.815 1.143
27 HO3 H H10 N N Y 0 4.111 -1.509 -0.986
28 HO1 H H11 N N Y 0 3.354 2.37 2.104