Chemical Components in the PDB

pdbe.org/chem
spacer

PDBeChem : Atoms of Molecule

 Molecule : CKB

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 36


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1' C C1' R N N 0 -0.267 0.136 0.575
2 C2 C C2 N N N 0 1.498 -0.191 -1.064
3 C2' C C2' R N N 0 -0.837 1.406 -0.063
4 C3' C C3' S N N 0 -2.33 1.505 0.262
5 C4 C C4 N N N 0 3.76 -0.247 -0.484
6 C4' C C4' S N N 0 -3.035 0.239 -0.234
7 C5 C C5 N N N 0 3.406 -0.043 0.872
8 C5' C C5' R N N 0 -2.381 -0.986 0.41
9 C6 C C6 N N N 0 2.102 0.08 1.199
10 C6' C C6' N N N 0 -3.04 -2.258 -0.126
11 C7 C C7 N N N 0 4.47 0.037 1.936
12 H1' H H1' N N N 0 -0.366 0.197 1.658
13 H2' H H2' N N N 0 -0.701 1.363 -1.144
14 H3' H H3' N N N 0 -2.464 1.598 1.34
15 H4' H H4' N N N 0 -2.944 0.172 -1.319
16 H5' H H5' N N N 0 -2.508 -0.939 1.492
17 H6 H H6 N N N 0 1.812 0.236 2.227
18 H6' H H6' N N N 0 -4.116 -2.205 0.035
19 H6'A H H6'A N N N 0 -2.836 -2.351 -1.193
20 H7 H H7 N N N 0 5.452 -0.083 1.477
21 H7A H H7A N N N 0 4.417 1.007 2.43
22 H7B H H7B N N N 0 4.312 -0.754 2.668
23 HN3 H HN3 N N N 0 3.026 -0.456 -2.349
24 HO2' H HO2' N N N 0 -0.468 3.39 0.098
25 HO3' H HO3' N N N 0 -3.832 2.773 -0.228
26 HO4' H HO4' N N N 0 -4.894 1.043 -0.242
27 HO6' H HO6' N N N 0 -2.884 -4.238 0.27
28 N1 N N1 N N N 0 1.148 0.0040 0.22
29 N3 N N3 N N N 0 2.791 -0.316 -1.418
30 O2 O O2 N N N 0 0.634 -0.261 -1.917
31 O2' O O2' N N N 0 -0.157 2.549 0.46
32 O3' O O3' N N N 0 -2.886 2.648 -0.39
33 O4 O O4 N N N 0 4.93 -0.36 -0.803
34 O4' O O4' N N N 0 -4.417 0.288 0.128
35 O5' O O5' N N N 0 -0.987 -1.001 0.094
36 O6' O O6' N N N 0 -2.51 -3.395 0.559