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PDBeChem : Atoms of Molecule
Molecule : CDC
Atoms of a chemical element, that composes a molecule
Total Number of Atoms: 57
Record |
Atom Name |
Symbol |
PDB Name |
Stereochemistry |
Is Aromatic |
Is Leaving Atom |
Charge |
X-Coordinate |
Y-Coordinate |
Z-Coordinate |
1 |
N1 |
N |
N1 |
N |
N |
N |
0 |
5.094 |
-0.536 |
0.567 |
2 |
C2 |
C |
C2 |
N |
N |
N |
0 |
4.718 |
-1.312 |
-0.467 |
3 |
N3 |
N |
N3 |
N |
N |
N |
0 |
5.308 |
-2.484 |
-0.697 |
4 |
C4 |
C |
C4 |
N |
N |
N |
0 |
6.276 |
-2.922 |
0.097 |
5 |
C5 |
C |
C5 |
N |
N |
N |
0 |
6.689 |
-2.136 |
1.192 |
6 |
C6 |
C |
C6 |
N |
N |
N |
0 |
6.084 |
-0.944 |
1.409 |
7 |
O2 |
O |
O2 |
N |
N |
N |
0 |
3.831 |
-0.93 |
-1.212 |
8 |
N4 |
N |
N4 |
N |
N |
N |
0 |
6.874 |
-4.137 |
-0.148 |
9 |
C1' |
C |
C1* |
R |
N |
N |
0 |
4.431 |
0.751 |
0.79 |
10 |
C2' |
C |
C2* |
R |
N |
N |
0 |
4.629 |
1.69 |
-0.427 |
11 |
O2' |
O |
O2* |
N |
N |
N |
0 |
5.856 |
2.414 |
-0.318 |
12 |
C3' |
C |
C3* |
S |
N |
N |
0 |
3.411 |
2.643 |
-0.303 |
13 |
C4' |
C |
C4* |
R |
N |
N |
0 |
2.41 |
1.86 |
0.568 |
14 |
O4' |
O |
O4* |
N |
N |
N |
0 |
2.998 |
0.58 |
0.855 |
15 |
O3' |
O |
O3* |
N |
N |
N |
0 |
3.794 |
3.863 |
0.336 |
16 |
C5' |
C |
C5* |
N |
N |
N |
0 |
1.096 |
1.67 |
-0.192 |
17 |
O5' |
O |
O5* |
N |
N |
N |
0 |
0.139 |
1.041 |
0.661 |
18 |
PA |
P |
PA |
S |
N |
N |
0 |
-1.212 |
0.873 |
-0.199 |
19 |
O1A |
O |
O1A |
N |
N |
N |
0 |
-0.913 |
0.139 |
-1.449 |
20 |
O2A |
O |
O2A |
N |
N |
N |
0 |
-1.803 |
2.326 |
-0.558 |
21 |
O3A |
O |
O3A |
N |
N |
N |
0 |
-2.297 |
0.05 |
0.66 |
22 |
PB |
P |
PB |
N |
N |
N |
0 |
-3.37 |
-0.538 |
-0.386 |
23 |
O1B |
O |
O1B |
N |
N |
N |
0 |
-4.73 |
-0.908 |
0.392 |
24 |
O2B |
O |
O2B |
N |
N |
N |
-1 |
-3.668 |
0.523 |
-1.468 |
25 |
O3B |
O |
O3B |
N |
N |
N |
0 |
-2.797 |
-1.808 |
-1.053 |
26 |
C14 |
C |
C14 |
N |
N |
N |
0 |
-5.677 |
-1.31 |
-0.6 |
27 |
C15 |
C |
C15 |
N |
N |
N |
0 |
-6.999 |
-1.677 |
0.076 |
28 |
N11 |
N |
N11 |
N |
N |
N |
1 |
-7.609 |
-0.469 |
0.649 |
29 |
C16 |
C |
C16 |
N |
N |
N |
0 |
-7.755 |
0.549 |
-0.399 |
30 |
C17 |
C |
C17 |
N |
N |
N |
0 |
-6.749 |
0.051 |
1.721 |
31 |
C18 |
C |
C18 |
N |
N |
N |
0 |
-8.93 |
-0.801 |
1.198 |
32 |
H5 |
H |
H5 |
N |
N |
N |
0 |
7.476 |
-2.479 |
1.847 |
33 |
H6 |
H |
H6 |
N |
N |
N |
0 |
6.382 |
-0.324 |
2.242 |
34 |
H41 |
H |
1H4 |
N |
N |
N |
0 |
7.582 |
-4.454 |
0.434 |
35 |
H42 |
H |
2H4 |
N |
N |
N |
0 |
6.588 |
-4.675 |
-0.902 |
36 |
H1' |
H |
H1* |
N |
N |
N |
0 |
4.803 |
1.22 |
1.701 |
37 |
H2' |
H |
H2* |
N |
N |
N |
0 |
4.592 |
1.129 |
-1.361 |
38 |
HO'2 |
H |
2HO* |
N |
N |
N |
0 |
5.919 |
2.977 |
-1.102 |
39 |
H3' |
H |
H3* |
N |
N |
N |
0 |
2.984 |
2.846 |
-1.285 |
40 |
H4' |
H |
H4* |
N |
N |
N |
0 |
2.226 |
2.4 |
1.497 |
41 |
H3T |
H |
H3T |
N |
N |
N |
0 |
4.464 |
4.275 |
-0.226 |
42 |
H5'1 |
H |
1H5* |
N |
N |
N |
0 |
1.27 |
1.044 |
-1.067 |
43 |
H5'2 |
H |
2H5* |
N |
N |
N |
0 |
0.717 |
2.642 |
-0.51 |
44 |
HO2A |
H |
HO2A |
N |
N |
N |
0 |
-1.984 |
2.77 |
0.281 |
45 |
H141 |
H |
1H14 |
N |
N |
N |
0 |
-5.292 |
-2.175 |
-1.14 |
46 |
H142 |
H |
2H14 |
N |
N |
N |
0 |
-5.842 |
-0.489 |
-1.298 |
47 |
H151 |
H |
1H15 |
N |
N |
N |
0 |
-6.813 |
-2.401 |
0.869 |
48 |
H152 |
H |
2H15 |
N |
N |
N |
0 |
-7.676 |
-2.111 |
-0.66 |
49 |
H161 |
H |
1H16 |
N |
N |
N |
0 |
-6.775 |
0.795 |
-0.807 |
50 |
H162 |
H |
2H16 |
N |
N |
N |
0 |
-8.393 |
0.163 |
-1.195 |
51 |
H163 |
H |
3H16 |
N |
N |
N |
0 |
-8.207 |
1.445 |
0.026 |
52 |
H171 |
H |
1H17 |
N |
N |
N |
0 |
-7.279 |
0.835 |
2.262 |
53 |
H172 |
H |
2H17 |
N |
N |
N |
0 |
-6.495 |
-0.756 |
2.407 |
54 |
H173 |
H |
3H17 |
N |
N |
N |
0 |
-5.837 |
0.461 |
1.288 |
55 |
H181 |
H |
1H18 |
N |
N |
N |
0 |
-9.568 |
-1.187 |
0.403 |
56 |
H182 |
H |
2H18 |
N |
N |
N |
0 |
-8.821 |
-1.557 |
1.976 |
57 |
H183 |
H |
3H18 |
N |
N |
N |
0 |
-9.382 |
0.095 |
1.623 |
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