Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : CA3

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 120


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1' C C1' R N N 0 8.682 -3.591 0.556
2 C11 C 0CT1 N Y N 0 -18.828 -1.938 0.84
3 C2 C C2 N Y N 0 8.839 -7.764 2.202
4 C2' C C2' R N N 0 9.845 -3.646 -0.468
5 C3' C C3' S N N 0 10.218 -2.151 -0.615
6 C4 C C4 N Y N 0 8.01 -5.991 0.998
7 C4' C C4' R N N 0 8.962 -1.399 -0.135
8 C5 C C5 N Y N 0 6.932 -6.792 0.581
9 C5' C C5' N N N 0 8.439 -0.492 -1.252
10 C6 C C6 N Y N 0 6.878 -8.12 1.037
11 C8 C C8 N Y N 0 6.668 -4.836 -0.317
12 CA1 C CA1 N N N 0 -8.895 1.638 -0.264
13 CA2 C CA2 N N N 0 -13.222 -0.783 -0.716
14 CA3 C CA3 N N N 0 -10.149 1.465 -1.125
15 CA4 C CA4 N N N 0 -11.066 0.42 -0.486
16 CA5 C CA5 N N N 0 -12.319 0.247 -1.346
17 CP1 C CP1 N N N 0 -6.403 2.941 0.122
18 CP2 C CP2 N N N 0 -5.379 3.959 -0.384
19 CP3 C CP3 N N N 0 -3.212 4.843 0.295
20 CP4 C CP4 N N N 0 -2.044 4.896 1.245
21 CP5 C CP5 N N N 0 -1.02 5.914 0.739
22 CP6 C CP6 N N N 0 1.146 6.798 1.418
23 CP7 C CP7 R N N 0 2.359 6.78 2.313
24 CP8 C CP8 N N N 0 3.108 5.459 2.13
25 CP9 C CP9 N N N 0 3.424 5.253 0.647
26 CPA C CPA N N N 0 2.237 4.305 2.632
27 CPB C CPB N N N 0 4.413 5.498 2.928
28 CT1 C CT1 N N N 0 -15.27 -2.102 -0.691
29 CT2 C CT2 N N N 0 -16.524 -2.276 -1.551
30 CT3 C CT3 N Y N 0 -17.426 -3.305 -0.922
31 CT4 C CT4 N Y N 0 -18.417 -3.068 0.13
32 CT5 C CT5 N Y N 0 -19.011 -4.316 0.393
33 CT6 C CT6 N Y N 0 -17.479 -4.612 -1.224
34 CT7 C CT7 N Y N 0 -20.005 -4.407 1.362
35 CT8 C CT8 N Y N 0 -20.396 -3.28 2.05
36 CT9 C CT9 N Y N 0 -19.806 -2.05 1.787
37 H1' H H1' N N N 0 9.07 -3.521 1.572
38 H12 H H12 N N N 0 5.144 -0.071 -2.555
39 H2 H H2 N N N 0 9.604 -8.158 2.854
40 H2' H H2' N N N 0 9.507 -4.058 -1.419
41 H22 H H22 N N N 0 2.739 2.497 -1.514
42 H3' H H3' N N N 0 10.434 -1.912 -1.656
43 H32 H H32 N N N 0 12.099 0.87 -0.352
44 H33 H H33 N N N 0 14.65 -0.762 0.541
45 H4' H H4' N N N 0 9.2 -0.804 0.747
46 H5'1 H 1H5' N N N 0 9.238 0.171 -1.584
47 H5'2 H 2H5' N N N 0 8.103 -1.104 -2.089
48 H61 H 1H6 N N N 0 5.816 -9.871 0.98
49 H62 H 2H6 N N N 0 5.142 -8.627 0.075
50 H8 H H8 N N N 0 6.25 -4.024 -0.894
51 HA11 H 1HA1 N N N 0 -8.368 0.687 -0.195
52 HA12 H 2HA1 N N N 0 -9.182 1.968 0.734
53 HA31 H 1HA3 N N N 0 -10.676 2.417 -1.194
54 HA32 H 2HA3 N N N 0 -9.862 1.135 -2.123
55 HA41 H 1HA4 N N N 0 -10.538 -0.532 -0.416
56 HA42 H 2HA4 N N N 0 -11.352 0.75 0.513
57 HA51 H 1HA5 N N N 0 -12.032 -0.083 -2.344
58 HA52 H 2HA5 N N N 0 -12.846 1.198 -1.415
59 HNT6 H 6HNT N N N 0 -18.631 -6.179 -0.478
60 HO'2 H 2HO' N N N 0 10.733 -5.321 0.242
61 HP1 H HP1 N N N 0 -4.233 3.446 1.328
62 HP11 H 1HP1 N N N 0 -5.938 1.957 0.182
63 HP12 H 2HP1 N N N 0 -6.752 3.239 1.111
64 HP2 H HP2 N N N 0 0.125 5.401 2.451
65 HP21 H 1HP2 N N N 0 -5.844 4.943 -0.444
66 HP22 H 2HP2 N N N 0 -5.029 3.661 -1.373
67 HP3 H HP3 N N N 0 3.539 7.844 1.057
68 HP41 H 1HP4 N N N 0 -1.579 3.912 1.305
69 HP42 H 2HP4 N N N 0 -2.394 5.194 2.234
70 HP51 H 1HP5 N N N 0 -1.485 6.898 0.679
71 HP52 H 2HP5 N N N 0 -0.671 5.617 -0.25
72 HP7 H HP7 N N N 0 2.045 6.879 3.352
73 HP91 H 1HP9 N N N 0 4.044 6.075 0.29
74 HP92 H 2HP9 N N N 0 2.494 5.225 0.078
75 HPA1 H 1HPA N N N 0 2.812 3.379 2.608
76 HPA2 H 2HPA N N N 0 1.918 4.509 3.654
77 HPA3 H 3HPA N N N 0 1.361 4.206 1.99
78 HPB1 H 1HPB N N N 0 5.006 6.356 2.613
79 HPB2 H 2HPB N N N 0 4.186 5.584 3.991
80 HPB3 H 3HPB N N N 0 4.975 4.581 2.75
81 HT1 H HT1 N N N 0 -14.654 -0.668 -2.131
82 HT10 H 0HT1 N N N 0 -18.374 -0.979 0.641
83 HT11 H 1HT1 N N N 0 -15.557 -1.772 0.307
84 HT12 H 2HT1 N N N 0 -14.743 -3.054 -0.622
85 HT21 H 1HT2 N N N 0 -16.236 -2.606 -2.55
86 HT22 H 2HT2 N N N 0 -17.051 -1.324 -1.621
87 HT6 H HT6 N N N 0 -16.87 -5.101 -1.969
88 HT7 H HT7 N N N 0 -20.47 -5.359 1.574
89 HT8 H HT8 N N N 0 -21.168 -3.352 2.802
90 HT9 H HT9 N N N 0 -20.123 -1.176 2.336
91 N1 N N1 N Y N 0 7.846 -8.555 1.837
92 N3 N N3 N Y N 0 8.931 -6.514 1.8
93 N6 N N6 N N N 0 5.842 -8.956 0.66
94 N7 N N7 N Y N 0 6.152 -6.026 -0.218
95 N9 N N9 N Y N 0 7.816 -4.764 0.416
96 NP1 N NP1 N N N 0 -4.243 4.011 0.54
97 NP2 N NP2 N N N 0 0.116 5.966 1.663
98 NT1 N NT1 N N N 0 -14.392 -1.102 -1.303
99 NT6 N NT6 N Y N 0 -18.416 -5.233 -0.444
100 O11 O O11 N N N 0 7.511 2.322 -2.244
101 O12 O O12 N N N 0 5.79 0.581 -2.859
102 O2' O O2' N N N 0 10.945 -4.398 0.049
103 O21 O O21 N N N 0 5.451 4.511 -1.613
104 O22 O O22 N N N 0 3.333 3.165 -1.882
105 O3' O O3' N N N 0 11.339 -1.831 0.212
106 O31 O O31 N N N 0 13.237 -2.127 -1.425
107 O32 O O32 N N N 0 12.443 0.23 -0.989
108 O33 O O33 N N N 0 13.795 -1.117 0.82
109 O4' O O4' N N N 0 7.972 -2.387 0.195
110 O5' O O5' N N N 0 7.346 0.286 -0.761
111 O6 O O6 N N N 0 5.477 2.135 -0.762
112 O7 O O7 N N N 0 4.123 4.018 0.477
113 OA2 O OA2 N N N 0 -12.895 -1.325 0.318
114 OP1 O OP1 N N N 0 -3.224 5.55 -0.691
115 OP2 O OP2 N N N 0 1.099 7.562 0.477
116 OP3 O OP3 N N N 0 3.22 7.868 1.97
117 P1 P P1 R N N 0 6.552 1.352 -1.669
118 P2 P P2 S N N 0 4.615 3.48 -0.959
119 P3 P P3 N N N 0 12.715 -1.231 -0.369
120 S S S N N N 0 -7.809 2.877 -1.022