Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : C9Y

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 40


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O3 O O1 N N N 0 -2.92 1.573 0.646
2 C4 C C1 N Y N 0 -3.288 -1.952 0.12
3 C5 C C2 N Y N 0 -2.535 -3.112 -0.108
4 C6 C C3 N Y N 0 -1.175 -2.994 -0.176
5 N1 N N1 N Y N 0 2.918 -0.797 -0.094
6 C7 C C4 N Y N 0 -0.578 -1.735 -0.018
7 C8 C C5 N Y N 0 0.898 -1.618 -0.094
8 N2 N N2 N Y N 0 2.961 -2.182 -0.308
9 C9 C C6 N Y N 0 1.612 -0.465 0.04
10 C10 C C7 N Y N 0 4.016 0.076 -0.027
11 C11 C C8 N Y N 0 3.813 1.431 0.197
12 C12 C C9 N Y N 0 4.892 2.289 0.264
13 N3 N N3 N Y N 0 1.754 -2.629 -0.303
14 C13 C C10 N Y N 0 6.18 1.799 0.106
15 C14 C C11 N Y N 0 6.384 0.444 -0.119
16 C15 C C12 N Y N 0 5.304 -0.417 -0.18
17 N4 N N4 N Y N 0 -1.303 -0.651 0.196
18 N N N5 N N N 0 -4.786 0.362 0.578
19 C C C13 N N N 0 -5.96 2.191 -0.502
20 C1 C C14 N N N 0 -5.593 1.561 0.817
21 C16 C C15 N Y N 0 -2.626 -0.714 0.271
22 C17 C C16 N N N 0 -3.446 0.483 0.51
23 C2 C C17 N N N 0 -5.418 -0.839 0.435
24 C3 C C18 N N N 0 -4.747 -1.982 0.214
25 F F F1 N N N 0 7.639 -0.034 -0.273
26 O4 O O2 N N N 0 7.242 2.646 0.172
27 H1 H H1 N N N 0 -3.016 -4.072 -0.227
28 H2 H H2 N N N 0 -0.562 -3.866 -0.351
29 H3 H H3 N N N 0 1.213 0.523 0.217
30 H4 H H4 N N N 0 2.81 1.813 0.32
31 H5 H H5 N N N 0 4.733 3.343 0.438
32 H6 H H6 N N N 0 5.463 -1.472 -0.35
33 H10 H H10 N N N 0 -6.501 1.287 1.354
34 H11 H H11 N N N 0 -5.02 2.272 1.412
35 H12 H H12 N N N 0 -6.496 -0.872 0.5
36 H13 H H13 N N N 0 -5.281 -2.915 0.107
37 H14 H H14 N N N 0 7.604 2.754 1.062
38 O1 O O3 N N N 0 -6.703 3.309 -0.528
39 O2 O O4 N N N 0 -5.587 1.689 -1.535
40 H7 H H7 N N N 0 -6.913 3.676 -1.398