Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : C6B

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 35


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O1P O O1P N N N 0 -2.829 2.368 -1.092
2 P P P N N N 0 -2.964 1.327 0.129
3 O2P O O2P N N N 0 -3.033 2.136 1.519
4 O3P O O3P N N N 0 -4.198 0.527 -0.039
5 O3' O O3' N N N 0 -1.686 0.347 0.142
6 C3' C C3' S N N 0 -1.408 -0.582 -0.908
7 C2' C C2' R N N 0 -0.032 -0.288 -1.555
8 O2' O O2' N N N 0 0.36 1.063 -1.303
9 C4' C C4' S N N 0 -1.202 -2.01 -0.342
10 C5' C C5' N N N 0 -2.16 -2.272 0.822
11 O5' O O5' N N N 0 -2.032 -3.629 1.249
12 O4' O O4' N N N 0 0.166 -1.996 0.119
13 C1' C C1' S N N 0 0.93 -1.268 -0.857
14 N1 N N1 N N N 0 2.005 -0.525 -0.195
15 C6 C C6 N N N 0 1.89 -0.196 1.123
16 C5 C C5 N N N 0 2.89 0.491 1.724
17 C4 C C4 N N N 0 4.024 0.849 0.966
18 N4 N N4 N N N 0 5.055 1.547 1.552
19 N3 N N3 N N N 0 4.092 0.507 -0.314
20 C2 C C2 N N N 0 3.103 -0.174 -0.889
21 O2 O O2 N N N 0 3.191 -0.481 -2.067
22 HO1P H HO1P N N N 0 -2.041 2.927 -1.047
23 HO2P H HO2P N N N 0 -3.78 2.747 1.582
24 H3' H H3' N N N 0 -2.2 -0.57 -1.656
25 H2' H H2' N N N 0 -0.066 -0.481 -2.627
26 HO2' H HO2' N N N 0 1.166 1.331 -1.767
27 H4' H H4' N N N 0 -1.338 -2.756 -1.125
28 H5' H H5' N N N 0 -1.916 -1.606 1.65
29 H5'A H H5'A N N N 0 -3.184 -2.088 0.498
30 HO5' H HO5' N N N 0 -2.612 -3.866 1.985
31 H1' H H1' N N N 0 1.351 -1.959 -1.588
32 H6 H H6 N N N 0 1.011 -0.481 1.682
33 H5 H H5 N N N 0 2.819 0.762 2.767
34 HN4 H HN4 N N N 0 5.003 1.795 2.488
35 HN4A H HN4A N N N 0 5.834 1.791 1.028