Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : C51

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 54


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C13 C C1 N Y N 0 -4.063 0.046 0.592
2 C18 C C2 N Y N 0 -5.226 0.115 1.353
3 C17 C C3 N Y N 0 -6.359 -0.552 0.943
4 C16 C C4 N Y N 0 -6.34 -1.297 -0.239
5 C15 C C5 N Y N 0 -5.17 -1.363 -1.001
6 C19 C C6 N N N 0 -7.516 -1.992 -0.668
7 C21 C C7 N Y N 0 2.815 -0.842 1.428
8 C22 C C8 N Y N 0 3.6 -1.79 2.08
9 C24 C C9 N Y N 0 5.308 -1.556 0.546
10 C27 C C10 N Y N 0 7.086 -1.322 -1.039
11 C1 C C11 N N N 0 -0.005 2.376 -0.674
12 C2 C C12 N N N 0 0.291 1.205 -1.614
13 C3 C C13 N N N 0 1.134 0.161 -0.88
14 C4 C C14 N N N 0 2.45 0.796 -0.426
15 C5 C C15 N N N 0 2.155 1.966 0.514
16 C6 C C16 N N N 0 1.311 3.01 -0.221
17 C7 C C17 N Y N 0 3.28 -0.233 0.297
18 C8 C C18 R N N 0 -0.773 1.867 0.547
19 C9 C C19 N N N 0 -1.069 3.037 1.488
20 C10 C C20 N N N 0 -2.07 1.242 0.101
21 N11 N N1 N N N 0 -2.916 0.722 1.012
22 O12 O O1 N N N 0 -2.351 1.207 -1.079
23 C14 C C21 N Y N 0 -4.039 -0.698 -0.582
24 N20 N N2 N N N 0 -8.449 -2.543 -1.009
25 N23 N N3 N Y N 0 4.791 -2.118 1.643
26 C25 C C22 N Y N 0 4.558 -0.592 -0.172
27 C26 C C23 N Y N 0 6.586 -1.912 0.081
28 C28 C C24 N Y N 0 6.351 -0.367 -1.737
29 C29 C C25 N Y N 0 5.105 -0.004 -1.324
30 H48 H H1 N N N 0 -5.239 0.691 2.267
31 H47 H H2 N N N 0 -7.261 -0.499 1.535
32 H46 H H3 N N N 0 -5.152 -1.938 -1.915
33 H49 H H4 N N N 0 1.837 -0.593 1.812
34 H50 H H5 N N N 0 3.217 -2.266 2.971
35 H52 H H6 N N N 0 8.069 -1.599 -1.391
36 H30 H H7 N N N 0 -0.605 3.12 -1.197
37 H32 H H8 N N N 0 -0.647 0.753 -1.937
38 H31 H H9 N N N 0 0.838 1.568 -2.484
39 H34 H H10 N N N 0 0.586 -0.201 -0.01
40 H33 H H11 N N N 0 1.344 -0.673 -1.55
41 H35 H H12 N N N 0 2.997 1.158 -1.296
42 H36 H H13 N N N 0 1.607 1.604 1.384
43 H37 H H14 N N N 0 3.092 2.418 0.837
44 H38 H H15 N N N 0 1.859 3.372 -1.091
45 H39 H H16 N N N 0 1.101 3.844 0.449
46 H40 H H17 N N N 0 -0.173 1.123 1.071
47 H43 H H18 N N N 0 -1.616 2.675 2.358
48 H44 H H21 N N N 0 -2.728 0.818 1.958
49 H42 H H19 N N N 0 -0.131 3.489 1.811
50 H41 H H20 N N N 0 -1.669 3.781 0.964
51 H45 H H22 N N N 0 -3.135 -0.749 -1.17
52 H51 H H23 N N N 0 7.169 -2.65 0.612
53 H53 H H24 N N N 0 6.771 0.086 -2.623
54 H54 H H25 N N N 0 4.542 0.732 -1.878