Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : C0Y

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 40


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 2.935 2.272 -0.84
2 C2 C C2 N N N 0 3.341 0.822 -0.571
3 C3 C C3 N N N 0 3.781 0.164 -1.88
4 C4 C C4 N N N 0 4.498 0.793 0.429
5 C5 C C5 N Y N 0 2.166 0.069 -0.001
6 C6 C C6 N Y N 0 0.965 0.714 0.196
7 C7 C C7 N Y N 0 -0.123 0.015 0.724
8 C8 C C8 N Y N 0 0.011 -1.337 1.05
9 C9 C C9 N Y N 0 1.214 -1.975 0.85
10 C10 C C10 N Y N 0 2.294 -1.278 0.319
11 O11 O O11 N N N 0 3.477 -1.912 0.119
12 C12 C C12 N N N 0 -1.411 0.704 0.937
13 O13 O O13 N N N 0 -1.44 1.776 1.509
14 N14 N N14 N N N 0 -2.556 0.143 0.498
15 C15 C C15 N N N 0 -3.842 0.847 0.624
16 C16 C C16 N N N 0 -4.537 0.834 -0.742
17 O17 O O17 N N N 0 -4.594 -0.51 -1.227
18 C18 C C18 N N N 0 -3.314 -1.106 -1.453
19 C19 C C19 N N N 0 -2.555 -1.189 -0.128
20 H11C H H11C N N N 0 2.11 2.293 -1.552
21 H12C H H12C N N N 0 2.621 2.74 0.093
22 H13C H H13C N N N 0 3.784 2.816 -1.252
23 H31C H H31C N N N 0 4.631 0.709 -2.292
24 H32C H H32C N N N 0 4.07 -0.869 -1.689
25 H33C H H33C N N N 0 2.957 0.185 -2.592
26 H41C H H41C N N N 0 4.184 1.261 1.362
27 H42C H H42C N N N 0 4.787 -0.241 0.621
28 H43C H H43C N N N 0 5.348 1.337 0.017
29 H6 H H6 N N N 0 0.866 1.76 -0.057
30 H8 H H8 N N N 0 -0.828 -1.88 1.458
31 H9 H H9 N N N 0 1.319 -3.02 1.102
32 H11 H H11 N N N 0 4.075 -1.877 0.877
33 H151 H H151 N N N 0 -4.467 0.341 1.36
34 H152 H H152 N N N 0 -3.667 1.877 0.937
35 H191 H H191 N N N 0 -1.529 -1.507 -0.313
36 H192 H H192 N N N 0 -3.049 -1.904 0.53
37 H161 H H161 N N N 0 -5.548 1.227 -0.64
38 H182 H H182 N N N 0 -2.747 -0.496 -2.156
39 H162 H H162 N N N 0 -3.975 1.45 -1.443
40 H181 H H181 N N N 0 -3.446 -2.107 -1.862