Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : BVD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 32


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O5' O O5* N N N 0 -1.405 2.285 5.403
2 C5' C C5* N N N 0 -0.444 1.229 5.453
3 C4' C C4* R N N 0 -0.872 0.105 4.507
4 O4' O O4* N N N 0 -0.882 0.569 3.139
5 C1' C C1* R N N 0 -0.784 -0.594 2.301
6 N1 N N1 N N N 0 -0.016 -0.276 1.095
7 C6 C C6 N N N 0 -0.595 -0.445 -0.129
8 C2 C C2 N N N 0 1.24 0.18 1.218
9 O2 O O2 N N N 0 1.714 0.315 2.329
10 N3 N N3 N N N 0 1.993 0.484 0.146
11 C4 C C4 N N N 0 1.493 0.344 -1.099
12 O4 O O4 N N N 0 2.168 0.622 -2.074
13 C5 C C5 N N N 0 0.117 -0.149 -1.256
14 C5A C C5A N N N 0 -0.478 -0.319 -2.596
15 C5B C C5B N N N 0 0.187 0.077 -3.674
16 BR BR BR N N N 0 -0.631 -0.008 -5.376
17 C2' C C2* N N N 0 -0.06 -1.685 3.114
18 C3' C C3* S N N 0 0.18 -1.031 4.499
19 O3' O O3* N N N 0 -0.061 -1.966 5.553
20 HO5' H *HO5 N N N 0 -1.098 2.971 6.012
21 H5'1 H 1H5* N N N 0 0.53 1.609 5.148
22 H5'2 H 2H5* N N N 0 -0.381 0.843 6.471
23 H4' H H4* N N N 0 -1.851 -0.28 4.789
24 H1' H H1* N N N 0 -1.781 -0.938 2.026
25 H6 H H6 N N N 0 -1.608 -0.81 -0.207
26 HN3 H HN3 N N N 0 2.899 0.808 0.269
27 H2'2 H 2H2* N N N 0 0.887 -1.946 2.644
28 H5A H H5A N N N 0 -1.455 -0.767 -2.7
29 H5B H H5B N N N 0 1.197 0.449 -3.578
30 H2'1 H 1H2* N N N 0 -0.692 -2.567 3.217
31 H3' H H3* N N N 0 1.189 -0.624 4.566
32 HO3' H *HO3 N N N 0 0.568 -2.69 5.434