Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : AMP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 37


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P P P N N N 0 -4.783 -0.98 0.105
2 O1P O O1P N N N 0 -5.82 -0.0050 -0.302
3 O2P O O2P N N N 0 -5.311 -1.828 1.368
4 O3P O O3P N N Y 0 -4.474 -1.978 -1.119
5 O5' O O5' N N N 0 -3.437 -0.195 0.511
6 C5' C C5' N N N 0 -2.782 0.727 -0.362
7 C4' C C4' R N N 0 -1.54 1.29 0.331
8 O4' O O4' N N N 0 -0.571 0.246 0.523
9 C3' C C3' S N N 0 -0.885 2.365 -0.558
10 O3' O O3' N N N 0 -0.852 3.623 0.119
11 C2' C C2' R N N 0 0.552 1.839 -0.794
12 O2' O O2' N N N 0 1.503 2.903 -0.72
13 C1' C C1' R N N 0 0.733 0.85 0.386
14 N9 N N9 N Y N 0 1.74 -0.163 0.06
15 C8 C C8 N Y N 0 1.508 -1.369 -0.53
16 N7 N N7 N Y N 0 2.628 -2.017 -0.672
17 C5 C C5 N Y N 0 3.646 -1.27 -0.183
18 C6 C C6 N Y N 0 5.036 -1.447 -0.069
19 N6 N N6 N N N 0 5.642 -2.606 -0.52
20 N1 N N1 N Y N 0 5.755 -0.474 0.482
21 C2 C C2 N Y N 0 5.186 0.636 0.914
22 N3 N N3 N Y N 0 3.889 0.845 0.829
23 C4 C C4 N Y N 0 3.09 -0.068 0.287
24 HOP2 H HOP2 N N N 0 -6.121 -2.327 1.196
25 HOP3 H HOP3 N N Y 0 -3.803 -2.646 -0.923
26 H5'1 H H5'1 N N N 0 -2.486 0.214 -1.277
27 H5'2 H H5'2 N N N 0 -3.462 1.543 -0.607
28 H4' H H4' N N N 0 -1.816 1.721 1.294
29 H3' H H3' N N N 0 -1.42 2.456 -1.503
30 HO3' H HO3' N N N 0 -0.45 4.336 -0.395
31 H2' H H2' N N N 0 0.624 1.321 -1.751
32 HO2' H HO2' N N N 0 1.373 3.594 -1.383
33 H1' H H1' N N N 0 1.006 1.385 1.296
34 H8 H H8 N N N 0 0.538 -1.734 -0.835
35 HN61 H HN61 N N N 0 5.106 -3.309 -0.92
36 HN62 H HN62 N N N 0 6.602 -2.717 -0.435
37 H2 H H2 N N N 0 5.807 1.402 1.355