Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : AIR

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 33


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N Y N 0 -0.783 0.044 2.707
2 C2 C C2 N Y N 0 -1.831 -0.778 2.425
3 N3 N N3 N Y N 0 -2.561 -0.906 3.498
4 C4 C C4 N Y N 0 -2.02 -0.188 4.494
5 C5 C C5 N Y N 0 -0.903 0.412 4.021
6 N6 N N6 N N N 0 -0.043 1.25 4.733
7 C1' C C1' R N N 0 0.276 0.452 1.782
8 C2' C C2' R N N 0 1.44 -0.563 1.816
9 C3' C C3' S N N 0 1.913 -0.639 0.345
10 C4' C C4' R N N 0 0.981 0.341 -0.4
11 O4' O O4' N N N 0 -0.204 0.42 0.42
12 O2' O O2' N N N 0 2.496 -0.096 2.658
13 O3' O O3' N N N 0 3.274 -0.219 0.234
14 C5' C C5' N N N 0 0.633 -0.201 -1.787
15 O5' O O5' N N N 0 -0.284 0.685 -2.429
16 P P P N N N 0 -0.605 0.056 -3.876
17 O6 O O6 N N N 0 -1.64 1.009 -4.659
18 O7 O O7 N N N 0 0.758 -0.064 -4.723
19 O8 O O8 N N N 0 -1.202 -1.287 -3.708
20 HC2 H HC2 N N N 0 -2.027 -1.244 1.471
21 HC4 H HC4 N N N 0 -2.408 -0.105 5.499
22 HN61 H 1HN6 N N N 0 -0.223 1.451 5.665
23 HN62 H 2HN6 N N N 0 0.736 1.629 4.297
24 HC1' H HC1' N N N 0 0.636 1.449 2.034
25 HC2' H HC2' N N N 0 1.085 -1.537 2.154
26 HC3' H HC3' N N N 0 1.793 -1.65 -0.043
27 HC4' H HC4' N N N 0 1.45 1.321 -0.483
28 HO'2 H 2HO' N N N 0 3.213 -0.74 2.59
29 HO'3 H 3HO' N N N 0 3.807 -0.866 0.716
30 HC51 H 1HC5 N N N 0 1.541 -0.279 -2.385
31 HC52 H 2HC5 N N N 0 0.178 -1.186 -1.688
32 HO6 H HO6 N N N 0 -1.804 0.597 -5.518
33 HO7 H HO7 N N N 0 1.114 0.83 -4.809