Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : AHZ

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 57


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O2' O O2* N N N 0 7.073 1.849 1.724
2 C2' C C2* R N N 0 5.986 1.669 0.813
3 C3' C C3* S N N 0 4.803 2.6 1.174
4 O3' O O3* N N N 0 4.899 3.026 2.535
5 C1' C C1* R N N 0 5.354 0.263 0.977
6 N9 N N9 N Y N 0 6.069 -0.721 0.16
7 C8 C C8 N Y N 0 5.729 -1.126 -1.096
8 N7 N N7 N Y N 0 6.582 -2.011 -1.524
9 C5 C C5 N Y N 0 7.521 -2.229 -0.572
10 C6 C C6 N Y N 0 8.656 -3.051 -0.474
11 N1 N N1 N Y N 0 9.373 -3.01 0.644
12 C2 C C2 N Y N 0 9.035 -2.218 1.645
13 N6 N N6 N N N 0 9.019 -3.885 -1.518
14 C4 C C4 N Y N 0 7.206 -1.4 0.518
15 N3 N N3 N Y N 0 7.98 -1.431 1.598
16 O4' O O4* N N N 0 4.005 0.442 0.494
17 C4' C C4* R N N 0 3.554 1.72 0.972
18 C5' C C5* N N N 0 2.626 2.363 -0.06
19 O5' O O5* N N N 0 1.42 1.603 -0.156
20 PA P PA N N N 0 0.214 1.992 -1.149
21 O2A O O2A N N N 0 -0.228 3.447 -0.877
22 O1A O O1A N N N -1 0.691 1.864 -2.613
23 O3A O O3A N N N 0 -1.028 0.999 -0.9
24 PB P PB N N N 0 -2.584 1.028 -1.313
25 O1B O O1B N N N 0 -3.129 2.467 -1.168
26 O2B O O2B N N N -1 -2.736 0.565 -2.78
27 O3B O O3B N N N 0 -3.414 0.04 -0.35
28 C7T C C7T N N N 0 -4.838 -0.076 -0.396
29 C6T C C6T N N N 0 -5.299 -1.097 0.647
30 C5T C C5T N Y N 0 -6.8 -1.22 0.599
31 S1T S S1T N Y N 0 -7.903 -0.283 1.512
32 C2T C C2T N Y N 0 -9.254 -1.142 0.778
33 C1R C C1R N N N 0 -10.674 -0.9 1.062
34 O1R O O1R N N N -1 -10.999 -0.04 1.87
35 O2R O O2R N N N 0 -11.533 -1.559 0.491
36 N3T N N3T N Y N 0 -8.787 -2.028 -0.061
37 C4T C C4T N Y N 0 -7.488 -2.08 -0.173
38 C1M C C1M N N N 0 -6.802 -3.045 -1.105
39 H2' H H2* N N N 0 6.31 1.834 -0.214
40 H1 H H1 N N N 0 7.443 2.743 1.723
41 H3' H H3* N N N 0 4.777 3.461 0.507
42 H3 H H3 N N N 0 5.697 3.536 2.732
43 H1' H H1* N N N 0 5.353 -0.037 2.025
44 H8 H H8 N N N 0 4.877 -0.766 -1.654
45 H2 H H2 N N N 0 9.646 -2.216 2.535
46 HN61 H 1HN6 N N N 0 8.487 -3.907 -2.329
47 HN62 H 2HN6 N N N 0 9.805 -4.448 -1.438
48 H4' H H4* N N N 0 3.03 1.597 1.92
49 H5'1 H 1H5* N N N 0 2.39 3.382 0.248
50 H5'2 H 2H5* N N N 0 3.121 2.384 -1.031
51 H7T1 H 1H7T N N N 0 -5.289 0.892 -0.181
52 H7T2 H 2H7T N N N 0 -5.143 -0.407 -1.388
53 H6T1 H 1H6T N N N 0 -4.848 -2.065 0.432
54 H6T2 H 2H6T N N N 0 -4.993 -0.766 1.639
55 H1M1 H 1H1M N N N 0 -6.603 -3.979 -0.579
56 H1M2 H 2H1M N N N 0 -7.445 -3.242 -1.963
57 H1M3 H 3H1M N N N 0 -5.862 -2.614 -1.447