Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 8YV

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 23


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C3 N N N 0 2.559 0.781 -0.0020
2 C2 C C2 N N N 0 1.798 -0.494 -0.126
3 C3 C C4 S N N 0 0.408 -0.489 -0.709
4 C4 C C1 R N N 0 -0.573 0.077 0.32
5 C5 C C5 R N N 0 -2.0 -0.033 -0.222
6 C6 C C6 N N N 0 -2.981 0.533 0.806
7 H3 H H4 N N N 0 0.392 0.131 -1.605
8 H4 H H1 N N N 0 -0.336 1.123 0.511
9 H5 H H6 N N N 0 -2.237 -1.079 -0.413
10 H61 H H8 N N N 0 -2.839 0.026 1.761
11 H62 H H9 N N N 0 -2.801 1.6 0.932
12 HO1B H H3 N N N 0 4.255 1.628 0.578
13 HO3 H H5 N N N 0 0.02 -2.433 -0.295
14 HO4 H H2 N N N 0 -0.666 -1.607 1.441
15 HO5 H H7 N N N 0 -1.907 1.651 -1.344
16 HO6 H H10 N N N 0 -4.997 0.66 0.956
17 O1A O O2 N N N 0 2.06 1.824 -0.37
18 O1B O O3 N N N 0 3.801 0.776 0.518
19 O2 O O4 N N N 0 2.296 -1.533 0.24
20 O3 O O5 N N N 0 0.028 -1.824 -1.046
21 O4 O O1 N N N 0 -0.468 -0.665 1.537
22 O5 O O6 N N N 0 -2.105 0.709 -1.439
23 O6 O O7 N N N 0 -4.32 0.325 0.352