Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 5P4

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 50


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O3 O O1 N N N 0 1.925 -1.571 1.157
2 C4 C C1 R N N 0 -0.635 -1.635 0.314
3 C5 C C2 N N N 0 -1.887 -2.354 -0.19
4 C6 C C3 S N N 0 -3.115 -1.765 0.516
5 N1 N N1 N N N 0 -3.221 -0.352 0.128
6 C7 C C4 N N N 0 -4.373 -2.519 0.081
7 C8 C C5 N N N 0 -4.412 0.174 -0.22
8 C9 C C6 N N N 0 -4.467 1.45 -1.021
9 C10 C C7 N Y N 0 -2.064 0.439 0.125
10 C11 C C8 N Y N 0 -2.193 1.821 0.036
11 C12 C C9 N Y N 0 -1.074 2.624 0.027
12 C13 C C10 N Y N 0 0.194 2.045 0.109
13 C14 C C11 N Y N 0 0.319 0.658 0.2
14 C15 C C12 N Y N 0 -0.807 -0.142 0.21
15 C3 C C13 N N N 0 1.76 -1.976 0.023
16 O O O2 N N N 0 2.818 -2.354 -0.718
17 C1 C C14 N N N 0 4.127 -2.251 -0.098
18 C2 C C15 N N N 0 4.457 -3.561 0.62
19 C C C16 N N N 0 5.181 -1.98 -1.174
20 N N N2 N N N 0 0.516 -2.047 -0.492
21 O1 O O3 N N N 0 -5.44 -0.378 0.111
22 C16 C C17 N Y N 0 1.4 2.898 0.098
23 O2 O O4 N Y N 0 2.674 2.467 0.17
24 C19 C C18 N Y N 0 3.505 3.522 0.133
25 C18 C C19 N Y N 0 2.771 4.647 0.037
26 C17 C C20 N Y N 0 1.417 4.255 0.007
27 H1 H H1 N N N 0 -0.46 -1.906 1.355
28 H2 H H2 N N N 0 -1.981 -2.212 -1.266
29 H3 H H3 N N N 0 -1.811 -3.418 0.034
30 H4 H H4 N N N 0 -2.992 -1.843 1.597
31 H5 H H5 N N N 0 -4.208 -3.591 0.183
32 H6 H H6 N N N 0 -5.212 -2.219 0.71
33 H7 H H7 N N N 0 -4.597 -2.283 -0.959
34 H8 H H8 N N N 0 -3.459 1.729 -1.328
35 H9 H H9 N N N 0 -5.087 1.298 -1.904
36 H10 H H10 N N N 0 -4.894 2.245 -0.409
37 H14 H H14 N N N 0 4.125 -1.432 0.622
38 H11 H H11 N N N 0 -3.175 2.267 -0.028
39 H12 H H12 N N N 0 -1.176 3.697 -0.043
40 H13 H H13 N N N 0 1.3 0.209 0.264
41 H18 H H18 N N N 0 5.183 -2.799 -1.894
42 H15 H H15 N N N 0 4.459 -4.379 -0.1
43 H16 H H16 N N N 0 5.439 -3.484 1.085
44 H17 H H17 N N N 0 3.706 -3.754 1.387
45 H19 H H19 N N N 0 4.947 -1.047 -1.686
46 H23 H H23 N N N 0 3.148 5.658 -0.013
47 H20 H H20 N N N 0 6.164 -1.903 -0.709
48 H21 H H21 N N N 0 0.384 -2.37 -1.397
49 H22 H H22 N N N 0 4.584 3.476 0.175
50 H24 H H24 N N N 0 0.559 4.906 -0.065