Chemical Components in the PDB

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  • BXX (Stereoisomer)
  • AHR (Stereoisomer)
  • BXY (Stereoisomer)
  • RIB (Stereoisomer)
  • BDR (Stereoisomer)
  • XYZ (Stereoisomer)
  • FUB (Stereoisomer)
  • Z6J (Stereoisomer)

PDBeChem : Atoms of Molecule

 Molecule : 32O

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 20


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O5 O O5' N N N 0 -3.26 -0.495 -0.282
2 C5 C C5' N N N 0 -2.305 0.296 0.427
3 C4 C C4' S N N 0 -0.938 0.175 -0.25
4 O4 O O4' N N N 0 -0.431 -1.171 -0.12
5 C3 C C3' R N N 0 0.101 1.059 0.474
6 O3 O O3' N N N 0 0.272 2.298 -0.218
7 C2 C C2' S N N 0 1.401 0.227 0.425
8 O2 O O2' N N N 0 2.416 0.926 -0.298
9 C1 C C1' S N N 0 0.994 -1.062 -0.322
10 O1 O O1' N N Y 0 1.665 -2.194 0.237
11 HO5 H H1 N N Y 0 -4.151 -0.466 0.092
12 H51 H H2 N N N 0 -2.622 1.339 0.421
13 H52 H H3 N N N 0 -2.234 -0.056 1.456
14 H4 H H4 N N N 0 -1.01 0.453 -1.301
15 H3 H H5 N N N 0 -0.2 1.238 1.506
16 HO3 H H6 N N Y 0 0.957 2.868 0.159
17 H2 H H7 N N N 0 1.743 -0.007 1.433
18 HO2 H H8 N N Y 0 3.255 0.449 -0.36
19 H1 H H9 N N N 0 1.221 -0.972 -1.385
20 HO1 H H10 N N Y 0 1.447 -3.032 -0.194