Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : 2LM

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 43


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C C C N N N 0 -1.227 2.848 -2.102
2 N N N N N N 0 0.196 2.356 -0.24
3 O1 O O1 N N N 0 -2.271 2.625 -2.681
4 P P P N N N 0 -0.516 -3.633 -0.494
5 N1 N N1 N Y N 0 4.127 -0.589 0.182
6 C2 C C2 N Y N 0 4.214 0.666 0.577
7 C3 C C3 N Y N 0 3.07 1.407 0.837
8 O3 O O3 N N N 0 3.164 2.7 1.244
9 C4 C C4 N Y N 0 1.825 0.807 0.674
10 C5 C C5 N Y N 0 1.78 -0.513 0.257
11 C6 C C6 N Y N 0 2.963 -1.187 0.019
12 CA C CA N N N 0 -0.905 2.122 -0.851
13 CB C CB N N N 0 -1.872 1.107 -0.297
14 SD S SD N N N 0 -3.908 0.544 1.44
15 CE C CE N N N 0 -4.837 1.496 2.674
16 CG C CG N N N 0 -2.743 1.765 0.774
17 C2A C C2A N N N 0 5.569 1.301 0.749
18 C4A C C4A N N N 0 0.557 1.575 0.946
19 C5A C C5A N N N 0 0.456 -1.208 0.067
20 OP1 O OP1 N N N 0 -1.386 -3.124 -1.577
21 OP2 O OP2 N N N 0 -1.382 -3.809 0.852
22 OP3 O OP3 N N N 0 0.101 -5.056 -0.925
23 OP4 O OP4 N N N 0 0.68 -2.587 -0.23
24 O2 O O2 N N N 0 -0.361 3.75 -2.6
25 HO3 H HO3 N N N 0 3.173 3.341 0.52
26 H6 H H6 N N N 0 2.934 -2.216 -0.307
27 HB H HB N N N 0 -2.505 0.732 -1.101
28 HBA H HBA N N N 0 -1.317 0.279 0.144
29 HE H HE N N N 0 -5.578 0.852 3.147
30 HEA H HEA N N N 0 -4.151 1.878 3.43
31 HEB H HEB N N N 0 -5.339 2.331 2.185
32 HG H HG N N N 0 -2.11 2.14 1.578
33 HGA H HGA N N N 0 -3.298 2.593 0.333
34 H2A H H2A N N N 0 5.874 1.765 -0.19
35 H2A1 H H2A1 N N N 0 5.518 2.061 1.529
36 H2A2 H H2A2 N N N 0 6.295 0.539 1.031
37 H4A H H4A N N N 0 0.713 2.247 1.79
38 H5A H H5A N N N 0 -0.133 -1.124 0.981
39 H5A1 H H5A1 N N N 0 -0.084 -0.741 -0.757
40 HOP2 H HOP2 N N N 0 -0.874 -4.14 1.606
41 HOP3 H HOP3 N N N 0 -0.564 -5.736 -1.1
42 H4A1 H H4A1 N N N 0 -0.247 0.878 1.18
43 H2 H H2 N N N 0 -0.613 4.196 -3.42