Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 1JB

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 61


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 -5.345 0.882 0.56
2 N3 N N3 N N N 0 -6.183 1.608 -1.503
3 C4 C C4 N N N 0 -6.638 2.744 -0.937
4 C5 C C5 N N N 0 -6.436 2.961 0.447
5 C6 C C6 N N N 0 -5.79 2.021 1.172
6 O1B O O1B N N N 0 3.602 -1.66 -1.779
7 PB P PB N N N 0 3.307 -1.532 -0.334
8 O2B O O2B N N N 0 3.831 -2.844 0.438
9 O3B O O3B N N N 0 4.05 -0.23 0.253
10 C1Q C C1Q R N N 0 5.457 -0.013 0.123
11 O5Q O O5Q N N N 0 5.719 0.704 -1.086
12 C5Q C C5Q R N N 0 5.066 1.973 -1.164
13 C6Q C C6Q N N N 0 5.394 2.633 -2.505
14 C4Q C C4Q R N N 0 5.553 2.868 -0.022
15 O4Q O O4Q N N N 0 6.957 3.095 -0.159
16 C3Q C C3Q S N N 0 5.275 2.172 1.315
17 O3Q O O3Q N N N 0 5.793 2.967 2.384
18 C2Q C C2Q R N N 0 5.96 0.802 1.317
19 O2Q O O2Q N N N 0 5.647 0.114 2.53
20 O3A O O3A N N N 0 1.718 -1.383 -0.123
21 PA P PA N N N 0 0.433 -2.142 -0.727
22 O1A O O1A N N N 0 0.185 -1.655 -2.242
23 O2A O O2A N N N 0 0.67 -3.603 -0.712
24 O5X O O5X N N N 0 -0.862 -1.799 0.165
25 C5X C C5X N N N 0 -2.139 -2.403 -0.052
26 C4X C C4X R N N 0 -3.142 -1.856 0.966
27 O4X O O4X N N N 0 -3.386 -0.452 0.736
28 C3X C C3X S N N 0 -4.535 -2.504 0.763
29 O3X O O3X N N N 0 -4.633 -3.738 1.477
30 C2X C C2X N N N 0 -5.48 -1.438 1.37
31 C1X C C1X R N N 0 -4.65 -0.14 1.347
32 C2 C C2 N N N 0 -5.543 0.688 -0.757
33 O2 O O2 N N N 0 -5.138 -0.332 -1.281
34 C5M C C5M N N N 0 -6.935 4.222 1.104
35 O4 O O4 N N N 0 -7.218 3.577 -1.611
36 H1 H H1 N N N 0 -6.318 1.452 -2.45
37 H2 H H2 N N N 0 -5.627 2.169 2.229
38 H3 H H3 N N N 0 3.67 -2.829 1.392
39 H4 H H4 N N N 0 5.972 -0.973 0.095
40 H5 H H5 N N N 0 3.988 1.833 -1.082
41 H6 H H6 N N N 0 5.048 1.995 -3.318
42 H7 H H7 N N N 0 4.896 3.601 -2.565
43 H8 H H8 N N N 0 6.472 2.773 -2.587
44 H9 H H9 N N N 0 5.025 3.82 -0.054
45 H10 H H10 N N N 0 7.206 3.529 -0.986
46 H11 H H11 N N N 0 4.2 2.043 1.442
47 H12 H H12 N N N 0 5.652 2.586 3.261
48 H13 H H13 N N N 0 7.039 0.934 1.24
49 H14 H H14 N N N 0 6.049 -0.763 2.6
50 H15 H H15 N N N 0 0.023 -0.706 -2.328
51 H16 H H16 N N N 0 -2.484 -2.172 -1.06
52 H17 H H17 N N N 0 -2.055 -3.483 0.065
53 H18 H H18 N N N 0 -2.784 -2.022 1.983
54 H19 H H19 N N N 0 -4.744 -2.651 -0.297
55 H20 H H20 N N N 0 -5.487 -4.181 1.38
56 H21 H H21 N N N 0 -6.375 -1.329 0.757
57 H22 H H22 N N N 0 -5.746 -1.703 2.393
58 H23 H H23 N N N 0 -4.492 0.217 2.364
59 H24 H H24 N N N 0 -7.426 4.849 0.36
60 H25 H H25 N N N 0 -7.646 3.966 1.89
61 H26 H H26 N N N 0 -6.094 4.763 1.538