triangle PDBeMotif: 9ict  
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coner
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coner
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Classification transferase/dna    | release date: Sat, Dec 16, 1995
Title dna polymerase beta (e.c.2.7.7.7)/dna complex + 2'- deoxyguanosine-5'-triphosphate, soaked in the presence of dgtp and mncl2
Authors H.PELLETIER, M.R.SAWAYA
Method X-RAY DIFFRACTION (resolution: 3.00Å)
PDBe Citation   
Small molecules:    search DGT DGT binding statistics DGT   search MN MN binding statistics MN   search NA NA binding statistics NA
Ligand bond colours:   *  covalent   *  ionic   *  hydrogen   *  electrostatic   *  van-der-waals   *  plane-atom   *  plane-plane   *  undefined  - Click here to show 5Å bonds
Chain A sequence:
MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG
KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD
IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ
LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIF
DYIQWKYREPKDRSE
Residue colours:  hydrophilic   hydrophobic   intermediate 
Assembly 1     View the assembly/model: ( JMolViewer Download PDB file RasMol script viewer AstexViewer™@MSD-EBI )
Motif search   chain:    Sequence numbers: 
   Using:   φ/ψ    residues code    secondary structures   
 coordinates of:  Cαs Side-chain
 
      View the fragment: rasmol script JMol viewer
chain A : PROTEIN (DNA POLYMERASE BETA (E.C.2.7.7.7))
JMol viewer RasMol script viewer  DGT 338A  ..                                                                                                                                            *                             **       *** *                                                                                                                                               
JMol viewer RasMol script viewer  NA 341A  ..                                                                                              *  *                                          |                             ||       ||| |                                                                                                                                               
JMol viewer RasMol script viewer  MN 340A  ..                                                                                              |  |                                          |                             ||       ||| |                                                                                                                                               
JMol viewer RasMol script viewer  MN 339A  ..                                                                                              |  |                                          |                             ||       ||* |                                                                                                                                               
sec str:  ......hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh......hhhhhhh.....hhhhhhhhhhhhh...hhhhhhhh.hhhhhhhhhhh.....hhhhhhhhhhh...hhhhhhhhhh..hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh....eeeeehhhhhh......eeeeee...........hhhhhhhhhhhhh...eeee......eeeeee.............eeeeee...hhhhhhhhhhhh..hhhhhhhhhhhhh..eeee..eeee...............hhhhhhhh......hhh...
sequence :  ..ETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWKYREPKDRSE
seq num:  ..9         19        29        39        49        59        69        79        89        99        109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329    
search RasMol script viewer Motif-ligand binding stats  PS00001 ..     |  || |     | ^***   |  ||      |  |     || ||| |  ||    |       | | |  ||   |   |   || || ||   |   || ||| | |||  ||  | |  ||     || ||  |  ||  |  ||    |  | ||     || |||  | || |    || |   | | |  |    | |||||||   || || |        || |   |          |  |    |   | || |||  |||  || || || | |               | ||  | |||          
search RasMol script viewer Motif-ligand binding stats  PS00005 ..     |  || |     |   |    |  ||      |  |     || ||| |  ||    |       ^** |  ||   |   |   || || ||   |   || ||| | |||  ||  | |  ||     || ||  |  ||  |  ||    |  | ||     |^**||  | || |    || |   ^** |  |    | |||||||   || || |        || |   |          |  |    |   | || |||  |||  || || || ^**               ^**|  | |||          
search RasMol script viewer Motif-ligand binding stats  PS00006 ..     |  || |     |   |    |  ||      |  |     ^***|| |  ||    |           |  ||   |   |   || || ||   |   || ||| ^***|  ||  | |  ||     || ||  |  ||  |  ||    |  | ||     ||  ||  ^*** |    || |       |  |    | |||||||   |^*** |        ^***   |          |  |    |   ^*** |||  |||  || |^*** |                 ^***  | |||          
search RasMol script viewer Motif-ligand binding stats  PS00007 ..     |  || |     |   |    |  ||      |  |      |  || |  ||    |           |  ||   |   |   || || ||   |   || ||| | | |  ||  | |  ||     || ||  |  ||  |  ||    ******^     ||  ||    || |    || |       |  |    | |||||||   || |  |         ******^          |  |    |   | |  |||  |||  || |  |  |                       | |||          
search RasMol script viewer Motif-ligand binding stats  PS00008 ..     |  || |     |   |    |  ||      |  |      |  || |  |^*****           |  ||   |   |   || || ^*****   || ||| | | |  ||  | |  ||     || ||  |  ||  |  ||       | ||     ||  |^*****| |    || |       |  |    | |||||||   || |  |                          |  |    |   | |  |||  |||  || |  |  |                       | |||          
search RasMol script viewer Motif-ligand binding stats  PS00522 ..     |  || |     |   |    |  ||      |  |      |  || |  |                 |  ||   |   |   || ||  |       || ||| | | |  ||  | |  ||     || ||  |  ||  |  ||       | ||     ****^******^*^****** |       |  |    | |||||||   || |  |                          |  |    |   | |  |||  |||  || |  |  |                       | |||          
search RasMol script viewer Motif-ligand binding stats  alphabetamotif ..     ***** |     |   |    *****      |  |      ***** |  |                 *****   |   |   || ||  |       || ||| | | |  ||  | *****     *****  *****  *****       | ||      |  |             |  |       |  |    *****||||   || |  |                          |  |    |   | *************** |  |  |                       | |||          
search RasMol script viewer Motif-ligand binding stats  asxmotif ..     |  |  |     |   |    |  |       |  |      |  |  |  |                 |  |    *****   || ||  |       || ||| | | |  ||  | |  |      || ||  |  |   |  |        | ||      |  |             |  |       |  |    | || ||||   || |  |                          |  |    |   | |  |||  | |  || |  |  |                       | |||          
search RasMol script viewer Motif-ligand binding stats  asxturn ..     |  |  |     |   |    |  |       |  |      |  |  |  |                 |  |    |   |   || ||  |       || ||| | | |  ||  | |  |      || ||  |  |   |  |        ***|      |  |             |  |       |  |    | || ||||   || |  |                          |  |    |   | |  |||  | |  || |  |  |                       | |||          
search RasMol script viewer Motif-ligand binding stats  betabulge ..     |  |  |     |   |    |  |       |  |      |  |  |  |                 |  |    |   |   || ||  |       || ||| | | |  ||  | |  |      || ||  |  |   |  |        |  |      |  |             |  |       |  |    | || ||||   ** |  |                          |  |    |   | |  |||  | |  || |  |  |                       | |||          
search RasMol script viewer Motif-ligand binding stats  betaturn ..     *******     |   |    ****       |  |      *******  |                 ****    |   |   ****|  |       |****| | | ****|  | ****      ****|  ****   ****        |  |      ****             |  |       ****    *******||      |  |                          ****    |   | ****|**** ****| |  |  |                       ****|          
search RasMol script viewer Motif-ligand binding stats  nest ..                 |   |               |  |         |  |  |                         |   |    |  |  |       |  *** | |     |  |            |  |                     |  |                       |  |                 |  ****      |  |                                  |   | |   |         ***  |  |                         ***          
search RasMol script viewer Motif-ligand binding stats  niche ..                 |   |               ****         *******                         |   |    *******       |    | | |     ****            ****                     ****                       ****                 |   ***      ****                                  |   | |   |              ****                                      
search RasMol script viewer Motif-ligand binding stats  schellmannloop ..                 |   |                                                            |   |                  ****** | |                                                                                              ******                                             |   | |   |                                                        
search RasMol script viewer Motif-ligand binding stats  stmotif ..                 |   |                                                            |   |                         | |                                                                                                                                                 |   | *****                                                        
search RasMol script viewer Motif-ligand binding stats  ststaple ..                 *****                                                            *****                         | |                                                                                                                                                 *****                                                              
search RasMol script viewer Motif-ligand binding stats  stturn ..                                                                                                                ***                                                                                                                                                                                                                    

chain T : DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3')
sec str:  .........
sequence :  ..CATCTGT
seq num:  ..2      

chain P : DNA (5'-D(*CP*AP*GP*AP*TP*G)-3')
JMol viewer RasMol script viewer  NA 342A  ..      
JMol viewer RasMol script viewer  NA 341A  ..     *
sec str:  ........
sequence :  ..CAGATG
seq num:  ..1     

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