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Classification transferase/dna    | release date: Fri, Dec 15, 1995
Title dna polymerase beta (pol b) (e.c.2.7.7.7) complexed with sev pairs of dna; soaked in the presence of dctp (1 millimolar) (5 millimolar)
Authors H.PELLETIER, M.R.SAWAYA
Method X-RAY DIFFRACTION (resolution: 2.90Å)
PDBe Citation   
Small molecules:    search DCP DCP binding statistics DCP   search MN MN binding statistics MN   search NA NA binding statistics NA
Ligand bond colours:   *  covalent   *  ionic   *  hydrogen   *  electrostatic   *  van-der-waals   *  plane-atom   *  plane-plane   *  undefined  - Click here to show 5Å bonds
Chain A sequence:
MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG
KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD
IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ
LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIF
DYIQWKYREPKDRSE
Residue colours:  hydrophilic   hydrophobic   intermediate 
Assembly 1     View the assembly/model: ( JMolViewer Download PDB file RasMol script viewer AstexViewer™@MSD-EBI )
Motif search   chain:    Sequence numbers: 
   Using:   φ/ψ    residues code    secondary structures   
 coordinates of:  Cαs Side-chain
 
      View the fragment: rasmol script JMol viewer
chain A : PROTEIN (DNA POLYMERASE BETA (E.C.2.7.7.7))
member of: CATH:search1.10.150.110/search1.10.150.20/search3.30.210.10/search3.30.460.10GENE3D:searchG3DSA_1.10.150.20/searchG3DSA_1.10.8.310/searchG3DSA_3.30.210.10/searchG3DSA_3.30.460.10PANTHER:searchPTHR11276PFAM:searchPF10391/searchPF14716/searchPF14791/searchPF14792PRINTS:searchDNAPOLX/searchDNAPOLXBETAPROSITE PATTERNS:searchPS00522, SMART:searchSM00278/searchSM00483SUPERFAMILY:searchSSF47802/searchSSF81301/searchSSF81585UniProt:searchP06746
JMol viewer RasMol script viewer  DCP 338A  ..                                                                                                                                            *                             **  *    *** *                                                                               *                                                               
JMol viewer RasMol script viewer  NA 342A  ..                                                     *                                                                                      |                             ||  |    ||| |                                                                               |                                                               
JMol viewer RasMol script viewer  NA 341A  ..                                                     |                                      * *  *                                          |                             ||  |    ||| |                                                                               |                                                               
JMol viewer RasMol script viewer  MN 340A  ..                                                     |                                      | |  |                                          |                             ||  |    ||| |                                                                               |                                                               
JMol viewer RasMol script viewer  MN 339A  ..                                                     |                                      | |  |                                          |                             ||  |    ||| |                                                                               |                                                               
sec str:  ......hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh......hhhhhhh.....hhhhhhhhhhhhh...hhhhhhhh.hhhhhhhhhhh.....hhhhhhhhhhh...hhhhhhhhhh..hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh....eeeeehhhhhh......eeeeee...........hhhhhhhhhhhhh...eeee......eeeeee.............eeeeee...hhhhhhhhhhhh..hhhhhhhhhhhhh..eeee..eeee...............hhhhhhhh......hhh...
sequence :  ..ETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWKYREPKDRSE
seq num:  ..9         19        29        39        49        59        69        79        89        99        109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329    
search RasMol script viewer Motif-ligand binding stats  ASN_GLYCOSYLATION ..   |   |           ^***   |  ||      |  |     |  ||  |  ||    |       | | |  ||    |   |  || || ||   |   || ||| | ||||||| ||            |  |  |  || ||  ||    |  | ||     || |||  | || |    || |   | |          ||||||||   ||  |          || |   |          |  |    | | ||||  |         | ||  | | |               | ||    | |    |  |  
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE ..   |   |                  |  ||      |  |     |  ||  |  ||    |       ^** |  ||    |   |  || || ||   |   || ||| | ||||||| ||            |  |  |  || ||  ||    |  | ||     |^**||  | || |    || |   ^**          ||||||||   ||  |          || |   |          |  |    | | ||||  |         | ||  | ^**               ^**|    | |    |  |  
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..   |   |                  |  ||      |  |     ^***|  |  ||    |           |  ||    |   |  || || ||   |   || ||| ^***||||| ||            |  |  |  || ||  ||    |  | ||     |   ||  ^*** |    || |   | |          ||||||||   |^***          ^***   |          |  |    | | ^***  |         | |^***                   ^***    | |    |  |  
search RasMol script viewer Motif-ligand binding stats  TYR_PHOSPHO_SITE ..   |   |                  |  ||      |  |         |  |  ||    |           |  ||    |   |  || || ||   |   || ||| | | ||||| ||            |  |  |  || ||  ||    ******^     |   ||    || |    || |   | |          ||||||||   ||              ******^          |  |    | | |||   |         | |                               | |    |  |  
search RasMol script viewer Motif-ligand binding stats  MYRISTYL ..   |   |                  |  ||      |  |         |  |  |^*****           |  ||    |   |  || || ^*****   || ||| | | ||||| ||            |  |  |  || ||  ||       | ||     |   |^*****| |    || |   | |          ||||||||   ||                               |  |    | | |||   |         | |                               | |    |  |  
search RasMol script viewer Motif-ligand binding stats  DNA_POLYMERASE_X ..   |   |                  |  ||      |  |         |  |  |                 |  ||    |   |  || ||  |       || ||| | | ||||| ||            |  |  |  || ||  ||       | ||     ****^******^*^****** |   | |          ||||||||   ||                               |  |    | | |||   |         | |                               | |    |  |  
search RasMol script viewer Motif-ligand binding stats  alphabetamotif ..   |   |                  *****      |  |         |  |  |                 *****    |   |  || ||  |       || ||| | *****|| ||            |  |  ************       | ||                       |  |   | |          *****|||   ||                               |  |    | | |||   |         | |                               | |    |  |  
search RasMol script viewer Motif-ligand binding stats  asxturn ..   |   |                  |  |       |  |         |  |  |                 |  |     |   |  || ||  |       || ||| | | || || ||            |  |  |  |  ||  |        ***|                       |  |   | |          ||||||||   ||                               |  |    | | |||   |         | |                               | |    |  |  
search RasMol script viewer Motif-ligand binding stats  betabulge ..   |   |                  |  |       |  |         |  |  |                 |  |     |   |  || ||  |       || ||| | | || || ||            |  |  |  |  ||  |        |  |                       |  |   | |          ||||||||   **                               |  |    | | |||   |         | |                               | |    |  |  
search RasMol script viewer Motif-ligand binding stats  betaturn ..   |   |                  ****       |  |         ****  |                 ****     |   |  ****|  |       |****| | **** ****|            |  |  ***********        |  |                       |  |   | |          ******||                                    ****    | ****|   |         | |                               | |    ****  
search RasMol script viewer Motif-ligand binding stats  gammaturn ..   |   |                             |  |         |  |  |                          |   |   |  |  |       |  | | |   |   |  |            |  |                     |  |                       |  |   ***           |  ||||                                            |   | |   |         | |                               | |          
search RasMol script viewer Motif-ligand binding stats  nest ..   |   |                             |  |         |  |  |                          |   |   |  |  |       |  *** |   |   |  |            |  |                     |  |                       |  |                 |  ****                                            |   | |   |         ***                               ***          
search RasMol script viewer Motif-ligand binding stats  niche ..   |   |                             ****         *******                          |   |   *******       |    ***   |   ****            ****                     ****                       ****                 |   ***                                            |   | |   |                                                        
search RasMol script viewer Motif-ligand binding stats  schellmannloop ..   |   |                                                                           |   |                 ****** |   |                                                                                            ******                                             |   | |   |                                                        
search RasMol script viewer Motif-ligand binding stats  stmotif ..   |   |                                                                           |   |                        *****                                                                                                                                               |   | *****                                                        
search RasMol script viewer Motif-ligand binding stats  ststaple ..   *****                                                                           *****                                                                                                                                                                            *****                                                              

chain T : DNA (5'-D(*CP*AP*TP*TP*AP*GP*AP*A)-3')
sec str:  ..........
sequence :  ..CATTAGAA
seq num:  ..1       

chain P : DNA (5'-D(*TP*CP*TP*AP*AP*TP*G)-3')
JMol viewer RasMol script viewer  DCP 338A  ..       
JMol viewer RasMol script viewer  NA 341A  ..       
JMol viewer RasMol script viewer  MN 340A  ..       
sec str:  .........
sequence :  ..TCTAATG
seq num:  ..1      

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