triangle PDBeMotif: 4oww  
  coner Sequences coner   coner 3D motifs coner   coner Ligand environment coner   coner Ligand bonds coner
   
coner
   Search  |  PDB header search  |  Upload PDB file  |  Molecule binding  |  Pair bonds  |  Motif binding  |  3D environment  |  Motif inclusion  
coner
AstexViewer TM
Download original PDB file
Download xml file
Download structure factors file
Classification dna binding protein    | release date: Tue, Feb 4, 2014
Title structural basis of soss1 in complex with a 35nt ssdna
Authors H.SONG, Q.SUN, W.REN, X.TANG
Method X-RAY DIFFRACTION (resolution: 2.30Å)
PDBe Citation   
Ligand bond colours:   *  covalent   *  ionic   *  hydrogen   *  electrostatic   *  van-der-waals   *  plane-atom   *  plane-plane   *  undefined  - Click here to show 5Å bonds
Chain A sequence:
MELQKGKGAAAAAAASGAAGGGGGGAGAGAPGGGRLLLSTSLDAKDELEERLERCMSIVTSMTAGVSEREANDALNAYVC
KGLPQHEEICLGLFTLILTEPAQAQKCYRDLALVSRDGMNIVLNKINQILMEKYLKLQDTCRTQLVWLVRELVKSGVLGA
DGVCMTFMKQIAGGDVTAKNIWLAESVLDILTEQREWVLKSSILIAMAVYTYLRLIVDHHGTAQLQALRQKEVDFCISLL
RERFMECLMIGRDLVRLLQNVARIPEFELLWKDIIHNPQALSPQFTGILQLLQSRTSRKFLACRLTPDMETKLLFMTSRV
RFGQQKRYQDWFQRQYLSTPDSQSLRCDLIRYICGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNVAASNAKLALFYDWL
FFSPDKDSIMNIEPAILVMHHSMKPHPAITATLLDFMCRIIPNFYPPLEGHVRQGVFSSLNHIVEKRVLAHLAPLFDNPK
LDKELRAMLREKFPEFCSSP
Chain B sequence:
MTTETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQPGDIIRLTKGYASVFKG
CLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPG
PGGGPHPPHTPSHPPSTRITRSQPNHTPAGPPGPSSNPVSNGKETRRSSKR
Chain C sequence:
MAANSSGQGFQNKNRVAILAELDKEKRKLLMQNQSSTNHPGASIALSRPSLNKDFRDHAEQQHIAAQQKAALQHAHAHSS
GYFITQDSAFGNLILPVLPRLDPE
Residue colours:  hydrophilic   hydrophobic   intermediate 
Assembly 1     View the assembly/model: ( JMolViewer Download PDB file RasMol script viewer AstexViewer™@MSD-EBI )
Motif search   chain:    Sequence numbers: 
   Using:   φ/ψ    residues code    secondary structures   
 coordinates of:  Cαs Side-chain
 
      View the fragment: rasmol script JMol viewer
chain A : INTEGRATOR COMPLEX SUBUNIT 3
member of: PANTHER:searchPTHR13587PFAM:searchPF10189UniProt:searchQ68E01
sec str:  .............hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.....hhhhhhh...hhhhhhh..hhhhhhhhhhhh.......hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh...hhhhhh....hhhhhhhhhhhh..hhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhh....hhhhhhhhhhhhhhhh
sequence :  ..RLLLSTSLDAKDELEERLERCMSIVTSMTAGVSEREANDALNAYVCKGLPQHEEICLGLFTLILTEPAQAQKCYRDLALVSRDGMNIVLNKINQILMEKYLKLQDTCRTQLVWLVRELVKSGVLGADGVCMTFMKQIAGGDVTAKNIWLAESVLDILTEQREWVLKSSILIAMAVYTYLRLIVDHHGTAQLQALRQKEVDFCISLLRERFMECLMIGRDLVRLLQNVARIPEFELLWKDIIHNPQALSPQFTGILQLLQSRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRQYLSTPDSQSLRCDLIRYICGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNVAASNAKLALFYDWLFFSPDKDSIMNIEPAILVMHHSMKPHPAITATLLDFMCRIIPNFYPPLEGHVRQGVFSSLNHIVEKRVLAHLAPLFDNPKLDKELRAMLREKFPEFC
seq num:  ..35        45        55        65        75        85        95        105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485          
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE ..     | ||  |   |     |  ||| || |^**|       |  |             | | ||           |  | | | |            |  |  ^**         || ||| | ||   |||  ||| | ^**  |   | ||  |     |  |   |                                                       |  |                 | ||     |  | ^**   |  |       ||  ^**|| |||       |   ||| || ^**       |  |   |   || |          |  | |   |       |  |  |     | |       |   ^**       |  |          |  |     |    |  || ||||     |  | |||               
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..     ^***  |   |     |  ||| || |^***       |  |             | | ||           |  | | | |            |  |              || ||| | ||   |||  ||| | ||   |   ^***  |     |  |   |                                                       |  |                 | ||     |  |       |  |       ||  || || |||       |   |^***|           |  |   |   || |          |  | |   |       |  |  |     | |       |   |         ^***          |  |     |    |  || ||||     |  | |||               
search RasMol script viewer Motif-ligand binding stats  MYRISTYL ..     | ||  |   |     |  ||| || |           |  |             | | ||           |  | | | |            |  |              || |^*****^*****|  ||^*****   |   | |   |     |  |   |                                                       |  |                 | ||     |  |       |  |       ||  || || |||       |   |||  |           |  |   |   || |          |  | |   |       |  |  |     | |       |   |                       |  |     ^*****  || ||||     |  | |||               
search RasMol script viewer Motif-ligand binding stats  asxmotif ..     | ||  *****     |  ||| || |           |  |             | | ||           |  | | | |            |  |              || ||| | ||   | |  ||  | |    |   | |   |     |  |   |                                                       |  |                 | ||     |  |       |  |       ||  || || |||       |   |||  |           |  |   |   || |          |  | |   |       |  |  |     | |       |   |                       |  |             || ||||     |  *****               
search RasMol script viewer Motif-ligand binding stats  asxturn ..     | ||            |  ||| || |           |  |             | | ||           |  | | | |            |  |              || ||| | ||   | |  ||  ***    |   | |   |     |  |   |                                                       |  |                 | ||     |  |       |  |       ||  || || |||       |   |||  |           |  |   |   || |          |  | |   |       |  |  |     | |       |   |                       |  |             || ||||     |  ***|                
search RasMol script viewer Motif-ligand binding stats  betaturn ..     | ||            |  ||| || |           ****             | | ||           |  | | | |            |  |              |****| | ||   | ****|  | |    |   | |   |     |  |   |                                                       |  |                 | ||     |  |       |  |       ||  || |****|       |   ||****           |  |   |   || |          |  | |   |       ****  |     | |       |   |                       ****             |****||     |  ****                
search RasMol script viewer Motif-ligand binding stats  nest ..     | ||            |  ||| || |                            | | ||           |  | *****            |  |              |  *** ***|   | |  ||  | |    |   | |   |     |  |   |                                                       |  |                 | ||     |  |       |  |       ||  || |  ***       |   |||              |  |   |   || |          |  | |   |          |  |     | |       |   |                                        |  ****     |  |  |                
search RasMol script viewer Motif-ligand binding stats  niche ..     ****            |  ||******                            | ****           ****                  ****              |    |    |   | **********    |   | |   |     ****   |                                                       ****                 ****     ****       ****       ||  |***            |   ***              ****   |   |***          ******   |          ****     | |       |   |                                        |    |      *******                
search RasMol script viewer Motif-ligand binding stats  schellmannloop ..     | |             |  ||  |                               |   |                                                    ******    |   |               |   | |   |        |   |                                                                            | |                            ||  ||              |    |                      |   || |               |   |                   | |       |   |                                        ******                             
search RasMol script viewer Motif-ligand binding stats  stmotif ..     | |             |  ||  |                               |   |                                                              |   |               |   | |   |        *****                                                                            | |                            ||  ||              |    |                      |   || |               *****                   | |       |   |                                                                           
search RasMol script viewer Motif-ligand binding stats  ststaple ..     | |             ********                               *****                                                              *****               ***** *****                                                                                         | |                            ******              ******                      *****| |                                       | |       *****                                                                           
search RasMol script viewer Motif-ligand binding stats  stturn ..     ***                                                                                                                                                                                                                                               ***                                                                                 ***                                       ***                                                                                       

chain B : SOSS COMPLEX SUBUNIT B1
member of: GENE3D:searchG3DSA_2.40.50.140PANTHER:searchPTHR13356/searchPTHR13356_SF3PFAM:searchPF01336SUPERFAMILY:searchSSF50249UniProt:searchQ9BQ15
sec str:  ...hhhhh......eeeeeeeeee...........eeeeeeee..eeeeeeeehhhhhhh...eeeeeeeeeeeee..eeeeeeeeeeeeeeeee..............
sequence :  ..TFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEP
seq num:  ..5         15        25        35        45        55        65        75        85        95        105    
search RasMol script viewer Motif-ligand binding stats  ASN_GLYCOSYLATION .. || |||  |           | |           | |        ^*** |  |  ||  |   |  |            | |      ||| |       ^*** 
search RasMol script viewer Motif-ligand binding stats  CAMP_PHOSPHO_SITE .. || |||  |           | |           | |          |  |  |  ||  |   |  |            | |      ||| |       |  | 
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE .. || |||  |           ^**           ^**          |  |  |  ||  |   |  |            ^**      ||| |       |  | 
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE .. || |||  |                                      ^***  |  ||  |   |  |                     ||| |       |  | 
search RasMol script viewer Motif-ligand binding stats  MYRISTYL .. || |||  |                                            |  ||  |   |  |                     ||| |       |  | 
search RasMol script viewer Motif-ligand binding stats  betabulge .. || |||  |                                            |  ||  |   |  |                     **| |       |  | 
search RasMol script viewer Motif-ligand binding stats  betaturn .. ****||  |                                            |  |****   |  |                       | |       |  | 
search RasMol script viewer Motif-ligand binding stats  gammaturn ..  |  ||  |                                            |  ||  |   |  |                       ***       |  | 
search RasMol script viewer Motif-ligand binding stats  niche ..  ********                                            ********   ****                                 **** 

chain C : SOSS COMPLEX SUBUNIT C
member of: PANTHER:searchPTHR31526UniProt:searchQ9NRY2
sec str:  ...hhhhhhhhhhhhhhhhh...eee........eee....
sequence :  ..QHIAAQQKAALQHAHAHSSGYFITQDSAFGNLILPVLPR
seq num:  ..62        72        82        92       
search RasMol script viewer Motif-ligand binding stats  ASN_GLYCOSYLATION ..              |  | |      | | |        
search RasMol script viewer Motif-ligand binding stats  MYRISTYL ..              |  | |      | | |        
search RasMol script viewer Motif-ligand binding stats  nest ..              |  | |      | ***        
search RasMol script viewer Motif-ligand binding stats  niche ..              ******      | |          
search RasMol script viewer Motif-ligand binding stats  stturn ..                 ***      ***          

chain L : DNA (5'-D(P*TP*TP*TP*TP*TP*T)-3')
sec str:  ........
sequence :  ..TTTTTT
seq num:  ..2     

   New search    4oww:  Sequences  |  3D motifs  |  Ligand environment  |   Ligand bonds   |  SPICE view  |  PDB  |  XML  |  Structure factors